View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16636_low_2 (Length: 569)
Name: NF16636_low_2
Description: NF16636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16636_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 18 - 544
Target Start/End: Original strand, 30892756 - 30893269
Alignment:
| Q |
18 |
gagttttcaatggctgtggtccaagccaacaacttattggaggaccaaagttatattgaatcaggtagtttgagttccggtgattctggaccgtacggta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30892756 |
gagttttcaatggctgtggtccaagccaacaacttattggaggaccaaagttatattgaatcaggtagtttgagttccggtgattctggaccgtacggta |
30892855 |
T |
|
| Q |
118 |
catttgttggtgtttatgatgggcatggagggcctgagacatcaaggtttatcaatgaacaccttgttcaccatctaaagagtaagtgacatcaagaatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30892856 |
catttgttggtgtttatgatgggcatggagggcctgagacatcaaggtttatcaatgaacaccttgttcaccatctaaagagtaagtgacatcaagaatg |
30892955 |
T |
|
| Q |
218 |
agttcttaaagctgtttttcctcttcattcgaatagattgtgcctgttactttgcttgttttccatataccagtagcttctaattccaagtggttgtagt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30892956 |
agttcttaaagctgtttttcctcttcattcgaatagattgtgcctgttactttgcttgtttttcatataccagtagcttctaattccaagtggttgtagt |
30893055 |
T |
|
| Q |
318 |
agttataatttgcttttaacttcgataaaatcatacgcggtactatgatgtaaagatgaggccaagtgaaaccttgttgagccaggaagcttagtgaata |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30893056 |
agttataatttgcttttaacttcgataaaatcatacgcggtactatgatgtaaagatgaggccaagtgaaaccttgttgagccaggaagcttagtgaata |
30893155 |
T |
|
| Q |
418 |
gaagagtatcctaaaactatcatatcttatgttttttaaggaacagcacattggcgtatctgatgccatacatatatgatactcgttcgtgtccatcata |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30893156 |
gaagagtatcctaaaactatcatatcttatgttttttaaggaacagcgcattggcgtatctgatgccatacata-------------agtgtccatcata |
30893242 |
T |
|
| Q |
518 |
gctgtttagatatcaaattgataatac |
544 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
30893243 |
gctgtttagatatcaaattgataatac |
30893269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 204
Target Start/End: Original strand, 51133620 - 51133803
Alignment:
| Q |
21 |
ttttcaatggctgtggtccaagccaacaacttattggaggaccaaagttatattgaatcaggtagtttgagttccggtgattctggaccgtacggtacat |
120 |
Q |
| |
|
||||| |||||||| || |||||||| ||||| |||| || || || | |||||||| ||||||||||||| ||| ||||| || | || || | |
|
|
| T |
51133620 |
ttttcgatggctgtagttcaagccaataacttgctggaagatcagagccagattgaatctggtagtttgagtttgaatgagtctggccctcatggaacct |
51133719 |
T |
|
| Q |
121 |
ttgttggtgtttatgatgggcatggagggcctgagacatcaaggtttatcaatgaacaccttgttcaccatctaaagagtaagt |
204 |
Q |
| |
|
|||||||||| |||||||| |||||||| |||||||| || |||||||||| | ||||| |||| ||||| |||||||||| |
|
|
| T |
51133720 |
ttgttggtgtctatgatggacatggaggtcctgagacgtcgcggtttatcaacaatcacctatttcaacatctcaagagtaagt |
51133803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University