View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16636_low_3 (Length: 520)
Name: NF16636_low_3
Description: NF16636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16636_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 3e-95; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 288 - 512
Target Start/End: Complemental strand, 8151263 - 8151037
Alignment:
| Q |
288 |
ggttttccaatttggtacgtttctgtactctaaaatttcttttcagctatgcttattcttgtcttggtaaaatatagccgtgttattattttgcaattca |
387 |
Q |
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| T |
8151263 |
ggttttccaatttggtacgtttctgtactctaaaatttcttttcagctacgcttattcttgtcttggtaaaatatagcagtgttattattttgcaattca |
8151164 |
T |
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| Q |
388 |
attggtggttgtttaggagttgttgtttccggtggttttcatg--nnnnnnnnncttgcggttctgtccttttgagacgatgttgctaactcactgcttt |
485 |
Q |
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| T |
8151163 |
attggtggttgtttaggagttgttgtttccggtggttttcatgtttttttttttcttgcggttctgtccttttgagacgatgttgctaactcactgcttt |
8151064 |
T |
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| Q |
486 |
agcagtcttgttcttttggttcttttc |
512 |
Q |
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| T |
8151063 |
agcagtcttgttcttttggtttttttc |
8151037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 139 - 258
Target Start/End: Complemental strand, 8151411 - 8151293
Alignment:
| Q |
139 |
atgaccaatcgttaaatattcgtatatttaatccatgtggcccccttgttttatttatcctaaaaaatagacctatttatcattctaaatataggtgtag |
238 |
Q |
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| T |
8151411 |
atgaccaatcattgaatatttgtgcatttaatccatgtcacccc-ttgttttatttatcctaaaaaatagacctatttatcattctaaatataggtgtag |
8151313 |
T |
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| Q |
239 |
agcattattaggtaaatcgt |
258 |
Q |
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| T |
8151312 |
agcattattaggtaaatcgt |
8151293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 8151665 - 8151592
Alignment:
| Q |
25 |
tcgactacgagaaggcatacactcatgtagtttgccttgaaaagattagactcctttcgcaatttgcttgttgc |
98 |
Q |
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| T |
8151665 |
tcgactacgagaagacatacactcatgtagtccgccttgaaaagattagactcctttcgcgatttgcttgttgc |
8151592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 8151485 - 8151451
Alignment:
| Q |
98 |
ccaagattatatttttaaattaatgaagattctct |
132 |
Q |
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| T |
8151485 |
ccaagattatattttaaaattaatgaagattctct |
8151451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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