View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16636_low_4 (Length: 517)
Name: NF16636_low_4
Description: NF16636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16636_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 248 - 501
Target Start/End: Original strand, 49894245 - 49894496
Alignment:
| Q |
248 |
aaaagtaatctatgtctcaccttttacaaatattcggttggctttgattatttgaaaacatattccagctttaaccattttgtttcaactttccaaacat |
347 |
Q |
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| T |
49894245 |
aaaagtaatctatgcctcaccttttacaaatattcggttggctttgattatttgaaaacatattccagctttaaccattttggttcaactttccaaacat |
49894344 |
T |
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| Q |
348 |
aattgaagtctccaatgtgcagttcatgtggtggatctaagacattcaaacaaatttaaaaaagagatttaagattcaaatcaaactctaatcaatgacc |
447 |
Q |
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| T |
49894345 |
aattgaagtctccaatgtgcagttcatgtggtggatctaagacattcaaacaaattt--aaaagagatttaggattcaaatcaaactttaatcaatgacc |
49894442 |
T |
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| Q |
448 |
tattttattatgagaaaaaattgggtcgcctaccccaaagtaacacgaccctcc |
501 |
Q |
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| T |
49894443 |
tattttattatgaaacaaaattgggtcgcctaccccaaagtaacaccaccctcc |
49894496 |
T |
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Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 97 - 164
Target Start/End: Original strand, 17863402 - 17863469
Alignment:
| Q |
97 |
ctttgaagaattgtgggtaatctactcaacaatcaattaaaattaactatatgaacaaatttacaagt |
164 |
Q |
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| T |
17863402 |
ctttgaagaattgtggataatttattcaacaatcaattaaaattagctatatgagtaaatttacaagt |
17863469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 229
Target Start/End: Complemental strand, 43274151 - 43274014
Alignment:
| Q |
93 |
ttatctttgaagaattgtgggtaatctactcaacaatcaattaaaattaactatatgaacaaatttacaagtaaa-tgaaagttaatttgtggatatgag |
191 |
Q |
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| T |
43274151 |
ttatccttgaaaaattgtgggtaatttattcatcagtcaatcaatattagcctcatgaacaaatttgtaggtaaagtgagagttagtttgcgggtatcag |
43274052 |
T |
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| Q |
192 |
ttgcatatttattcatttaactcattttaattggttga |
229 |
Q |
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| T |
43274051 |
ttgcatattaactcatttggctaattttaattggttga |
43274014 |
T |
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