View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16636_low_5 (Length: 413)

Name: NF16636_low_5
Description: NF16636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16636_low_5
NF16636_low_5
[»] chr6 (8 HSPs)
chr6 (114-404)||(26047219-26047508)
chr6 (114-404)||(26049244-26049533)
chr6 (114-404)||(26070413-26070702)
chr6 (114-362)||(26065528-26065773)
chr6 (114-362)||(26085497-26085742)
chr6 (114-406)||(25524764-25525059)
chr6 (114-353)||(25516543-25516780)
chr6 (291-362)||(19696895-19696966)
[»] chr4 (3 HSPs)
chr4 (39-85)||(23499443-23499489)
chr4 (24-80)||(29391162-29391218)
chr4 (24-85)||(9521884-9521945)
[»] chr7 (3 HSPs)
chr7 (24-85)||(19267374-19267435)
chr7 (33-85)||(30969761-30969813)
chr7 (24-85)||(38603007-38603068)
[»] chr8 (1 HSPs)
chr8 (39-85)||(39421528-39421574)
[»] chr2 (1 HSPs)
chr2 (24-87)||(35112498-35112560)
[»] chr1 (1 HSPs)
chr1 (33-85)||(3279409-3279461)


Alignment Details
Target: chr6 (Bit Score: 140; Significance: 3e-73; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 114 - 404
Target Start/End: Original strand, 26047219 - 26047508
Alignment:
Q  114 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 213  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| ||||||||| ||  |||||||| ||||||||    
T  26047219 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctgtctg--attgttcgcataacaat 26047316  T
Q  214 gcaataaaaaacgggagttggcaag--tataatccatgcaaccagaatgagatcaatgctgctactataacatgttaaggttaccaaacatgtcatacga 311  Q
    |||| |||| | | |||||||||||  ||||||||||||| ||||||||||| |||||||||||   ||||||||||| |||||||||||||||||| ||    
T  26047317 gcaacaaaacatgagagttggcaagagtataatccatgcagccagaatgagaacaatgctgcta---taacatgttaaagttaccaaacatgtcataaga 26047413  T
Q  312 attggaaccaataaatgtcatgcttaatgtaattgatagcagtttgtttta-ttcaac-nnnnnnnnntgaactctcacatagaaggctgtgtga 404  Q
    |||||||||||||||||||||||||||| | |||||||||||| ||||||| ||||||          |||||||||||||||||||||||||||    
T  26047414 attggaaccaataaatgtcatgcttaatatcattgatagcagtgtgttttacttcaacaaaaaaaatatgaactctcacatagaaggctgtgtga 26047508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 114 - 404
Target Start/End: Original strand, 26049244 - 26049533
Alignment:
Q  114 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 213  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| ||||||||| ||  |||||||| ||||||||    
T  26049244 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctgtctg--attgttcgcataacaat 26049341  T
Q  214 gcaataaaaaacgggagttggcaag--tataatccatgcaaccagaatgagatcaatgctgctactataacatgttaaggttaccaaacatgtcatacga 311  Q
    |||| |||| | | |||||||||||  ||||||||||||| ||||||||||| |||||||||||   ||||||||||| |||||||||||||||||| ||    
T  26049342 gcaacaaaacatgagagttggcaagagtataatccatgcagccagaatgagaacaatgctgcta---taacatgttaaagttaccaaacatgtcataaga 26049438  T
Q  312 attggaaccaataaatgtcatgcttaatgtaattgatagcagtttgtttta-ttcaac-nnnnnnnnntgaactctcacatagaaggctgtgtga 404  Q
    |||||||||||||||||||||||||||| | |||||||||||| ||||||| ||||||          |||||||||||||||||||||||||||    
T  26049439 attggaaccaataaatgtcatgcttaatatcattgatagcagtgtgttttacttcaacaaaaaaaatatgaactctcacatagaaggctgtgtga 26049533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 114 - 404
Target Start/End: Original strand, 26070413 - 26070702
Alignment:
Q  114 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 213  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| ||||||||| ||  |||||||| ||||||||    
T  26070413 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctgtctg--attgttcgcataacaat 26070510  T
Q  214 gcaataaaaaacgggagttggcaag--tataatccatgcaaccagaatgagatcaatgctgctactataacatgttaaggttaccaaacatgtcatacga 311  Q
    |||| |||| | | |||||||||||  ||||||||||||| ||||||||||| |||||||||||   ||||||||||| |||||||||||||||||| ||    
T  26070511 gcaacaaaacatgagagttggcaagagtataatccatgcagccagaatgagaacaatgctgcta---taacatgttaaagttaccaaacatgtcataaga 26070607  T
Q  312 attggaaccaataaatgtcatgcttaatgtaattgatagcagtttgtttta-ttcaac-nnnnnnnnntgaactctcacatagaaggctgtgtga 404  Q
    |||||||||||||||||||||||||||| | |||||||||||| ||||||| ||||||          |||||||||||||||||||||||||||    
T  26070608 attggaaccaataaatgtcatgcttaatatcattgatagcagtgtgttttacttcaacaaaaaaaatatgaactctcacatagaaggctgtgtga 26070702  T

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Target: chr6; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 114 - 362
Target Start/End: Original strand, 26065528 - 26065773
Alignment:
Q  114 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 213  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| ||||||||| ||  |||||||| ||||||||    
T  26065528 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctgtctg--attgttcgcataacaat 26065625  T
Q  214 gcaataaaaaacgggagttggcaag--tataatccatgcaaccagaatgagatcaatgctgctactataacatgttaaggttaccaaacatgtcatacga 311  Q
    |||| |||| | | |||||||||||  ||||||||||||| ||||||||||| |||||||||||   ||||||||||| |||||||||||||||||| ||    
T  26065626 gcaacaaaacatgagagttggcaagagtataatccatgcagccagaatgagaacaatgctgcta---taacatgttaaagttaccaaacatgtcataaga 26065722  T
Q  312 attggaaccaataaatgtcatgcttaatgtaattgatagcagtttgtttta 362  Q
    |||||||||||||||||||||||||||| | |||||||||||| |||||||    
T  26065723 attggaaccaataaatgtcatgcttaatatcattgatagcagtgtgtttta 26065773  T

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Target: chr6; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 114 - 362
Target Start/End: Original strand, 26085497 - 26085742
Alignment:
Q  114 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 213  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| ||||||||| ||  |||||||| ||||||||    
T  26085497 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctgtctg--attgttcgcataacaat 26085594  T
Q  214 gcaataaaaaacgggagttggcaag--tataatccatgcaaccagaatgagatcaatgctgctactataacatgttaaggttaccaaacatgtcatacga 311  Q
    |||| |||| | | |||||||||||  ||||||||||||| ||||||||||| |||||||||||   ||||||||||| |||||||||||||||||| ||    
T  26085595 gcaacaaaacatgagagttggcaagagtataatccatgcagccagaatgagaacaatgctgcta---taacatgttaaagttaccaaacatgtcataaga 26085691  T
Q  312 attggaaccaataaatgtcatgcttaatgtaattgatagcagtttgtttta 362  Q
    |||||||||||||||||||||||||||| | |||||||||||| |||||||    
T  26085692 attggaaccaataaatgtcatgcttaatatcattgatagcagtgtgtttta 26085742  T

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Target: chr6; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 114 - 406
Target Start/End: Original strand, 25524764 - 25525059
Alignment:
Q  114 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 213  Q
    |||||||||||||||||||||| |||| ||||||||||| |||||||||||||| ||||| |||| || ||||||||| |||||||||||| ||||||||    
T  25524764 ctgctatttttccctctcctgatttcttccttcccctctcatgtctcacatatcgtctccctccacctctttttctgtctgtgattgttcgcataacaat 25524863  T
Q  214 gcaataaaaaacgggagttggca--agtataatccatgcaaccagaatgagatcaatgctgctactataacatg---ttaaggttaccaaacatgtcata 308  Q
    |||| |||| | | |||||||||  |||||||||||||||  |||||||||||||||||||   ||||||||||   |||| ||||||||||||||||||    
T  25524864 gcaacaaaacatgagagttggcaagagtataatccatgcagtcagaatgagatcaatgctg---ctataacatgtacttaaagttaccaaacatgtcata 25524960  T
Q  309 cgaattggaaccaataaatgtcatgcttaatgtaattgatagcagtttgtttt-attcaacnnnnnnnnntgaactctcacatagaaggctgtgtgagc 406  Q
     |||||||||||||||||||||||||||||||| | |||||||| | |||||| |||||||         ||||||||||||||||||| |||||||||    
T  25524961 agaattggaaccaataaatgtcatgcttaatgtcactgatagcaatgtgttttaattcaacaaaaaaaaatgaactctcacatagaagggtgtgtgagc 25525059  T

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Target: chr6; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 114 - 353
Target Start/End: Original strand, 25516543 - 25516780
Alignment:
Q  114 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 213  Q
    ||||||||||||||| |||||| ||||||||||| |||| ||||||||| |||||||||| ||||||| ||||||||| | |||||||||| || ||||     
T  25516543 ctgctatttttccctttcctgatttctcccttccactctcatgtctcacttatcatctccctccatctctttttctgtctttgattgttcgcat-acaac 25516641  T
Q  214 gcaataaaaaacgggagttggc--aagtataatccatgcaaccagaatgagatcaatgctgctactataacatgttaaggttaccaaacatgtcatacga 311  Q
    |||| |||| | | ||||||||  ||||||||||||||||  |||||||||| |||   |||| |||||||||||||| |||||||||||||||||| ||    
T  25516642 gcaacaaaacatgagagttggcaaaagtataatccatgcaggcagaatgagaacaa---tgcttctataacatgttaaagttaccaaacatgtcataaga 25516738  T
Q  312 attggaaccaataaatgtcatgcttaatgtaattgatagcag 353  Q
    |||||||| ||||| ||||||||||||| | |||||||||||    
T  25516739 attggaacgaataattgtcatgcttaatatcattgatagcag 25516780  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 362
Target Start/End: Original strand, 19696895 - 19696966
Alignment:
Q  291 gttaccaaacatgtcatacgaattggaaccaataaatgtcatgcttaatgtaattgatagcagtttgtttta 362  Q
    ||||||||||| |||||| ||||||||||||| |||| |||| |||||||| | |||||| ||| |||||||    
T  19696895 gttaccaaacaagtcatatgaattggaaccaacaaatttcattcttaatgtcactgataggagtgtgtttta 19696966  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 23499489 - 23499443
Alignment:
Q  39 gtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 85  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||    
T  23499489 gtaaagtgagaaaattaagggttgttattttaacaaactcatgattt 23499443  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 29391162 - 29391218
Alignment:
Q  24 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcat 80  Q
    |||| ||||||||| ||||||| |||||| | |||||||||||| ||||||||||||    
T  29391162 taaagtgagtaaagtgtaaagtaagaaaattgagggttgttattgtaacaaactcat 29391218  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 9521945 - 9521884
Alignment:
Q  24 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 85  Q
    |||| ||| ||||| ||||||||||||||  || |||||| | |||||||||||||||||||    
T  9521945 taaagtgactaaagtgtaaagtgagaaaatcaaaggttgtcaatttaacaaactcatgattt 9521884  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 19267435 - 19267374
Alignment:
Q  24 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 85  Q
    |||| ||||||||| ||||| ||||||||  |||||||||||||||||||||||||||||||    
T  19267435 taaagtgagtaaagtgtaaattgagaaaatcaagggttgttattttaacaaactcatgattt 19267374  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 30969761 - 30969813
Alignment:
Q  33 taaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 85  Q
    ||||| ||||||||||||||  ||||||||||||| |||||||||||||||||    
T  30969761 taaagtgtaaagtgagaaaatcaagggttgttattgtaacaaactcatgattt 30969813  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 38603007 - 38603068
Alignment:
Q  24 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 85  Q
    |||| ||||| ||| ||||||  ||||||  |||||||||||||||||||||||||||||||    
T  38603007 taaagtgagtgaagtgtaaagcaagaaaatcaagggttgttattttaacaaactcatgattt 38603068  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 39421528 - 39421574
Alignment:
Q  39 gtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 85  Q
    ||||||||||||||  || ||||||||||||||||||||||||||||    
T  39421528 gtaaagtgagaaaatcaaaggttgttattttaacaaactcatgattt 39421574  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 35112498 - 35112560
Alignment:
Q  24 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattttt 87  Q
    |||||||  ||||| |||||||||||||| |||||||||||||| |||||| ||||| ||||||    
T  35112498 taaattggttaaagtgtaaagtgagaaaa-taagggttgttattataacaagctcataattttt 35112560  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 3279409 - 3279461
Alignment:
Q  33 taaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 85  Q
    ||||| ||||||||||||||  |||||||||| ||| |||||||| |||||||    
T  3279409 taaagtgtaaagtgagaaaatgaagggttgttttttaaacaaacttatgattt 3279461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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