View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16636_low_9 (Length: 352)
Name: NF16636_low_9
Description: NF16636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16636_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 8e-86; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 11 - 175
Target Start/End: Complemental strand, 2534294 - 2534130
Alignment:
| Q |
11 |
tccaataaaatgtcataacaaccagaagagctacaatttaactgaatagctaagccgctagcagaagttccggtaaatcctcgaaatttcacggaactca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2534294 |
tccaataaaatgtcataacaaccagaagagctacaatttaactgaatagctaagccgctagcagaagttccggtaaatcctcgaaatttcactgaactca |
2534195 |
T |
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| Q |
111 |
ccgacacatttgcaccctaataatttcaacacataaatattataattatatataaaaccagccaa |
175 |
Q |
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| T |
2534194 |
ccgacacatttgcaccctaataatttcaacacataaatattataattatatataaaaccagccaa |
2534130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 11 - 187
Target Start/End: Complemental strand, 2543738 - 2543562
Alignment:
| Q |
11 |
tccaataaaatgtcataacaaccagaagagctacaatttaactgaatagctaagccgctagcagaagttccggtaaatcctcgaaatttcacggaactca |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
2543738 |
tccaataaaatgtcataacaaccagaagagctacaatttaactgaatagctaagccgctagcagaagttccggtaaatccttgaaatttcactgaactca |
2543639 |
T |
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| Q |
111 |
ccgacacatttgcaccctaataatttcaacacataaatattataattatatataaaaccagccaatacagttgaaat |
187 |
Q |
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| T |
2543638 |
ccgacacatttgcaccctaataatttcaacacataaatattataattatatataaaaccagccaacatagttgaaat |
2543562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 194 - 336
Target Start/End: Complemental strand, 2543524 - 2543382
Alignment:
| Q |
194 |
attttaccttccgaccaataccataatcctgatctataattattgggttcctaacattaacaaggatgatttgctcaaatgtaatctgttttgcataacc |
293 |
Q |
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| T |
2543524 |
attttaccttgtgactaatactatattcctgatctataattattgggttgttaacattaacaaggatgatttgctcaaatgtaatatgttttgcataacc |
2543425 |
T |
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| Q |
294 |
tgatccaccctgcaaaaaagttgacgatcaaattggaattatt |
336 |
Q |
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| T |
2543424 |
taatccaccctgcaaaaaatttgacgatcgaattggaactatt |
2543382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 226 - 310
Target Start/End: Complemental strand, 2566421 - 2566337
Alignment:
| Q |
226 |
tctataattattgggttcctaacattaacaaggatgatttgctcaaatgtaatctgttttgcataacctgatccaccctgcaaaa |
310 |
Q |
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|||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2566421 |
tctataattattgggttcttaacattactaaggatgatttgttcaaatgtaatctgtcttgcataacctgatccaccctgcaaaa |
2566337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 223 - 321
Target Start/End: Complemental strand, 1831667 - 1831569
Alignment:
| Q |
223 |
tgatctataattattgggttcctaacattaacaaggatgatttgctcaaatgtaatctgttttgcataacctgatccaccctgcaaaaaagttgacgat |
321 |
Q |
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|||||||||||||| | |||| |||||||||||||||| ||||| ||| ||||||| ||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
1831667 |
tgatctataattatggagttcttaacattaacaaggataatttggtcatatgtaatatgtcttgcataacctgatccaccctgcaaaaaaattgacgat |
1831569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 223 - 321
Target Start/End: Complemental strand, 1866110 - 1866012
Alignment:
| Q |
223 |
tgatctataattattgggttcctaacattaacaaggatgatttgctcaaatgtaatctgttttgcataacctgatccaccctgcaaaaaagttgacgat |
321 |
Q |
| |
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|||||||||||||| | |||| |||||||||||||||| ||||| ||| ||||||| ||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
1866110 |
tgatctataattatggagttcttaacattaacaaggataatttggtcatatgtaatatgtcttgcataacctgatccaccctgcaaaaaaattgacgat |
1866012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 229 - 307
Target Start/End: Complemental strand, 2556561 - 2556483
Alignment:
| Q |
229 |
ataattattgggttcctaacattaacaaggatgatttgctcaaatgtaatctgttttgcataacctgatccaccctgca |
307 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2556561 |
ataattattgggttcataacattactaaggatgacttgctcaaatgtaatctgtcttgcataacctgatccaccctgca |
2556483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 1831909 - 1831802
Alignment:
| Q |
29 |
caaccagaagagctacaatttaactgaatagctaagccgctagcagaagttccggtaaatcctcgaaatttcacggaactcaccgacacatttgcaccct |
128 |
Q |
| |
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|||||||| |||| |||||||||||||||||||||| || |||| |||||||| |||||||||||| || |||| |||||||||||||| | || ||| |
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| T |
1831909 |
caaccagatgagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaatcctcgatatgtcacatcactcaccgacacatctccagcct |
1831810 |
T |
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| Q |
129 |
aataattt |
136 |
Q |
| |
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|||||||| |
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| T |
1831809 |
aataattt |
1831802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 1866352 - 1866245
Alignment:
| Q |
29 |
caaccagaagagctacaatttaactgaatagctaagccgctagcagaagttccggtaaatcctcgaaatttcacggaactcaccgacacatttgcaccct |
128 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||| || |||| |||||||| |||||||||||| || |||| |||||||||||||| | || ||| |
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| T |
1866352 |
caaccagatgagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaatcctcgatatgtcacatcactcaccgacacatctccagcct |
1866253 |
T |
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| Q |
129 |
aataattt |
136 |
Q |
| |
|
|||||||| |
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|
| T |
1866252 |
aataattt |
1866245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 2556821 - 2556720
Alignment:
| Q |
11 |
tccaataaaatgtcataacaaccagaagagctacaatttaactgaatagctaagccgctagcagaagttccggtaaatcctcgaaatttcacggaactca |
110 |
Q |
| |
|
||||||| |||||| |||||||||| |||||||||||||| | || ||||| |||||||||||||||||||||||||||| || |||| ||||||| |
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| T |
2556821 |
tccaatagaatgtcgaaacaaccagaggagctacaatttaaattaacagctatcttgctagcagaagttccggtaaatcctcgatatgtcaccgaactca |
2556722 |
T |
|
| Q |
111 |
cc |
112 |
Q |
| |
|
|| |
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|
| T |
2556721 |
cc |
2556720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 309
Target Start/End: Complemental strand, 32926310 - 32926224
Alignment:
| Q |
223 |
tgatctataattattgggttcctaacattaacaaggatgatttgctcaaatgtaatctgttttgcataacctgatccaccctgcaaa |
309 |
Q |
| |
|
|||||||||||||||| |||| ||||||| ||| ||||||||||| ||||||| |||||||||||| |||||||||| |||| |
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| T |
32926310 |
tgatctataattattgtgttcttaacatttgtaagttgaatttgctcaaaagtaatcttttttgcataacccgatccaccctacaaa |
32926224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 309
Target Start/End: Complemental strand, 2550990 - 2550902
Alignment:
| Q |
221 |
cctgatctataattattgggttcctaacattaacaaggatgatttgctcaaatgtaatctgttttgcataacctgatccaccctgcaaa |
309 |
Q |
| |
|
|||||||||| ||||| |||||| ||||||| ||||| | || ||||||||||| || | | | ||||||||||||||||||| |||| |
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|
| T |
2550990 |
cctgatctattattatcgggttcataacattgacaagcacaatatgctcaaatgttatttttctagcataacctgatccaccctacaaa |
2550902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 2566631 - 2566517
Alignment:
| Q |
27 |
aacaaccagaagagctacaatttaactgaatagctaagccgctagcagaagttccggtaaatcctcgaaatttcacggaactcaccgacacatttgcacc |
126 |
Q |
| |
|
||||||||| |||||||||||||| | || ||||| ||||||||||||||| ||||||||||| || |||| ||||||||| |||| || | | |
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| T |
2566631 |
aacaaccaggggagctacaatttaaattaacagctatcttgctagcagaagttccaataaatcctcgatatgtcacagaactcaccttcacagatgtatc |
2566532 |
T |
|
| Q |
127 |
ctaataatttcaaca |
141 |
Q |
| |
|
|||| |||||||||| |
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|
| T |
2566531 |
ctaaaaatttcaaca |
2566517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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