View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16637_high_7 (Length: 257)
Name: NF16637_high_7
Description: NF16637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16637_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 37 - 241
Target Start/End: Complemental strand, 5686338 - 5686134
Alignment:
| Q |
37 |
ctatagaatctacgtatattttggatggagattttcatatccaaatatgcctaatctaatcaatatagcattgccgttactcctaagtgtagagtggatc |
136 |
Q |
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| T |
5686338 |
ctatagaatctacgtatattttggatggagattttcatatccaaatatgcctaatctaatcaatatagcattgccgttactcccaagtgtagagtggatc |
5686239 |
T |
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| Q |
137 |
ctgtacggtgctagtgcaataattgtgggaatgaaaggaccaaacatgttaaaagtaactatatatgggtatgatttatttcccaacaatataaaggatt |
236 |
Q |
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| T |
5686238 |
ctgtacggtcctagtgcaataattgtgggaatgaaaggaccaaacatgttaaaagtaactatatatgggtatgatttatttcccaacaatataaaggatt |
5686139 |
T |
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| Q |
237 |
aaggt |
241 |
Q |
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| T |
5686138 |
aaggt |
5686134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 51 - 241
Target Start/End: Complemental strand, 5698088 - 5697893
Alignment:
| Q |
51 |
tatattttggatggagattttcatatccaaatatgcctaatctaatcaatatagcattgccgttactcctaagtgtagagtggatcctgtac---ggtgc |
147 |
Q |
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| T |
5698088 |
tatattttggatgaagattttcata-ccaaatatgcctaatctaatcaatatagcattgccgttactcctaagtatagagtatcccctgtacggtggtgc |
5697990 |
T |
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| Q |
148 |
tagtgcaataattgtgggaatgaaaggaccaaacatgttaaaagtaactat---atatgggtatgatttatttcccaacaatataaaggattaaggt |
241 |
Q |
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| T |
5697989 |
tagtgtaatgattgtgggaatgaaataaccaaacatgttaaaagtaactatataatatgggaatgatttatttcccaacaatatcaaggattaaggt |
5697893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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