View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16637_low_1 (Length: 974)

Name: NF16637_low_1
Description: NF16637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16637_low_1
NF16637_low_1
[»] chr2 (29 HSPs)
chr2 (96-958)||(24115428-24116295)
chr2 (813-958)||(24111411-24111556)
chr2 (609-728)||(14470588-14470707)
chr2 (607-728)||(6721972-6722093)
chr2 (624-721)||(14229356-14229453)
chr2 (583-728)||(16514421-16514566)
chr2 (616-726)||(6217222-6217332)
chr2 (624-728)||(38933625-38933729)
chr2 (583-721)||(29508693-29508832)
chr2 (661-720)||(33018620-33018679)
chr2 (609-686)||(37762039-37762116)
chr2 (576-643)||(14470582-14470649)
chr2 (607-698)||(15011301-15011392)
chr2 (663-721)||(9173058-9173116)
chr2 (616-697)||(2828614-2828695)
chr2 (662-727)||(29508767-29508832)
chr2 (616-692)||(2893993-2894069)
chr2 (576-648)||(32545864-32545936)
chr2 (647-728)||(37961767-37961848)
chr2 (574-614)||(14464552-14464592)
chr2 (656-728)||(32545858-32545930)
chr2 (598-696)||(8534158-8534256)
chr2 (589-643)||(14229356-14229410)
chr2 (579-641)||(14892343-14892405)
chr2 (616-714)||(29925580-29925678)
chr2 (657-698)||(14464581-14464622)
chr2 (656-721)||(14892330-14892395)
chr2 (662-727)||(16514421-16514486)
chr2 (594-643)||(33018626-33018675)
[»] chr5 (35 HSPs)
chr5 (579-725)||(12913796-12913942)
chr5 (574-697)||(16439126-16439249)
chr5 (583-728)||(19655155-19655300)
chr5 (607-728)||(29699388-29699509)
chr5 (583-728)||(291094-291239)
chr5 (616-728)||(16971174-16971286)
chr5 (576-697)||(3180087-3180207)
chr5 (616-728)||(3899869-3899981)
chr5 (637-728)||(2953241-2953332)
chr5 (616-721)||(28818947-28819052)
chr5 (624-728)||(26662437-26662542)
chr5 (624-728)||(26934032-26934137)
chr5 (594-721)||(30117831-30117958)
chr5 (647-728)||(2093933-2094014)
chr5 (583-671)||(19598329-19598417)
chr5 (610-728)||(2356298-2356413)
chr5 (663-727)||(291094-291158)
chr5 (579-643)||(2953271-2953335)
chr5 (579-642)||(291179-291242)
chr5 (585-728)||(12913799-12913942)
chr5 (618-693)||(38134404-38134479)
chr5 (662-720)||(30117904-30117962)
chr5 (662-727)||(19598329-19598394)
chr5 (662-727)||(19655155-19655220)
chr5 (582-643)||(19655239-19655300)
chr5 (574-643)||(32485630-32485699)
chr5 (667-728)||(32485630-32485691)
chr5 (579-643)||(16971225-16971289)
chr5 (579-643)||(29699448-29699512)
chr5 (662-721)||(1638460-1638519)
chr5 (659-702)||(7009401-7009444)
chr5 (662-728)||(3180136-3180201)
chr5 (662-716)||(16439146-16439200)
chr5 (589-643)||(28818998-28819052)
chr5 (579-648)||(2356348-2356416)
[»] scaffold0586 (2 HSPs)
scaffold0586 (576-723)||(7048-7194)
scaffold0586 (662-728)||(7123-7188)
[»] chr6 (12 HSPs)
chr6 (575-728)||(17750892-17751044)
chr6 (624-728)||(24618597-24618701)
chr6 (616-718)||(12343130-12343232)
chr6 (579-683)||(24587454-24587558)
chr6 (662-721)||(24587464-24587523)
chr6 (616-697)||(10521876-10521957)
chr6 (609-697)||(551192-551280)
chr6 (618-721)||(13043489-13043592)
chr6 (661-727)||(24975749-24975815)
chr6 (663-728)||(17750899-17750963)
chr6 (579-648)||(24618594-24618663)
chr6 (639-697)||(2315331-2315389)
[»] scaffold0161 (2 HSPs)
scaffold0161 (583-727)||(27217-27361)
scaffold0161 (665-727)||(27299-27361)
[»] chr3 (29 HSPs)
chr3 (575-698)||(55223221-55223344)
chr3 (576-697)||(33689166-33689287)
chr3 (583-728)||(41752961-41753106)
chr3 (589-710)||(47492061-47492182)
chr3 (616-728)||(1801442-1801554)
chr3 (579-727)||(30734399-30734547)
chr3 (656-728)||(45103105-45103177)
chr3 (662-728)||(33689172-33689238)
chr3 (616-697)||(30476501-30476582)
chr3 (618-697)||(29031741-29031820)
chr3 (594-728)||(30580752-30580886)
chr3 (594-728)||(50524710-50524844)
chr3 (583-720)||(51046077-51046214)
chr3 (589-689)||(43139744-43139844)
chr3 (573-692)||(18321638-18321757)
chr3 (662-721)||(47492123-47492182)
chr3 (677-728)||(55223228-55223279)
chr3 (575-684)||(47677295-47677395)
chr3 (662-720)||(30580832-30580890)
chr3 (577-643)||(50524783-50524849)
chr3 (662-727)||(41752961-41753026)
chr3 (582-643)||(41753045-41753106)
chr3 (579-643)||(45103102-45103166)
chr3 (609-697)||(50549998-50550086)
chr3 (662-721)||(43139785-43139844)
chr3 (674-728)||(30734490-30734544)
chr3 (582-643)||(1801442-1801503)
chr3 (616-697)||(49418718-49418799)
chr3 (662-727)||(51046149-51046214)
[»] chr8 (26 HSPs)
chr8 (583-728)||(5033158-5033303)
chr8 (583-728)||(35440965-35441110)
chr8 (579-727)||(5667090-5667238)
chr8 (575-697)||(34229630-34229752)
chr8 (583-728)||(33841587-33841732)
chr8 (583-720)||(10086754-10086891)
chr8 (583-698)||(8243414-8243529)
chr8 (576-724)||(8796412-8796560)
chr8 (662-728)||(8796418-8796484)
chr8 (662-728)||(34229637-34229703)
chr8 (663-728)||(5667093-5667158)
chr8 (576-720)||(43844475-43844617)
chr8 (583-728)||(45191123-45191268)
chr8 (662-721)||(43844545-43844604)
chr8 (624-721)||(6296643-6296740)
chr8 (662-727)||(8243464-8243529)
chr8 (674-727)||(10086754-10086807)
chr8 (573-697)||(35031641-35031766)
chr8 (662-727)||(35441045-35441110)
chr8 (576-728)||(4958590-4958740)
chr8 (136-240)||(20557637-20557741)
chr8 (662-727)||(5033158-5033223)
chr8 (579-643)||(5033242-5033306)
chr8 (662-727)||(2581822-2581887)
chr8 (662-727)||(22649842-22649907)
chr8 (662-727)||(33841667-33841732)
[»] chr7 (28 HSPs)
chr7 (583-728)||(11016866-11017011)
chr7 (624-728)||(42628333-42628437)
chr7 (583-721)||(38975802-38975940)
chr7 (583-728)||(4290542-4290687)
chr7 (583-697)||(41018255-41018369)
chr7 (583-697)||(34854722-34854836)
chr7 (576-643)||(41945936-41946003)
chr7 (583-666)||(45231908-45231991)
chr7 (610-692)||(27028825-27028907)
chr7 (616-697)||(4649350-4649433)
chr7 (656-728)||(41945925-41945997)
chr7 (656-727)||(48000691-48000762)
chr7 (666-727)||(4290542-4290603)
chr7 (662-727)||(11016866-11016931)
chr7 (662-727)||(34854771-34854836)
chr7 (662-727)||(38975802-38975867)
chr7 (665-727)||(45231929-45231991)
chr7 (618-728)||(48000769-48000879)
chr7 (579-652)||(27028721-27028794)
chr7 (616-697)||(29053341-29053422)
chr7 (616-684)||(10419488-10419556)
chr7 (594-686)||(15027550-15027642)
chr7 (579-642)||(11016951-11017014)
chr7 (662-721)||(27028731-27028790)
chr7 (579-641)||(4290628-4290690)
chr7 (616-686)||(7671949-7672019)
chr7 (665-727)||(41018307-41018369)
chr7 (674-707)||(43500001-43500034)
[»] chr1 (38 HSPs)
chr1 (583-728)||(48993913-48994058)
chr1 (579-717)||(32540755-32540893)
chr1 (583-720)||(29179601-29179738)
chr1 (576-727)||(17127561-17127712)
chr1 (607-728)||(5995390-5995511)
chr1 (616-721)||(15220841-15220946)
chr1 (616-728)||(29371398-29371510)
chr1 (582-692)||(9157306-9157416)
chr1 (576-697)||(4608986-4609107)
chr1 (616-728)||(33219603-33219715)
chr1 (583-697)||(37155043-37155157)
chr1 (616-686)||(741540-741610)
chr1 (616-728)||(49444909-49445019)
chr1 (582-686)||(1091582-1091686)
chr1 (662-721)||(44706860-44706919)
chr1 (662-728)||(9157306-9157372)
chr1 (616-686)||(34062239-34062309)
chr1 (594-692)||(45728295-45728393)
chr1 (662-727)||(29179673-29179738)
chr1 (662-727)||(37155043-37155108)
chr1 (589-697)||(44706810-44706919)
chr1 (574-643)||(49444901-49444970)
chr1 (618-697)||(38674532-38674609)
chr1 (624-692)||(46333978-46334046)
chr1 (662-728)||(21630038-21630104)
chr1 (624-697)||(8337878-8337951)
chr1 (662-727)||(46931994-46932059)
chr1 (624-697)||(47303433-47303506)
chr1 (662-727)||(48993993-48994058)
chr1 (576-672)||(36290459-36290555)
chr1 (579-643)||(48993910-48993974)
chr1 (583-686)||(48498412-48498515)
chr1 (647-697)||(1819516-1819566)
chr1 (662-728)||(17127640-17127706)
chr1 (576-662)||(21630032-21630118)
chr1 (594-652)||(28395645-28395703)
chr1 (681-727)||(48498412-48498458)
chr1 (616-697)||(48604974-48605055)
[»] chr4 (29 HSPs)
chr4 (616-728)||(42375040-42375152)
chr4 (583-728)||(6271699-6271844)
chr4 (589-718)||(23444275-23444404)
chr4 (583-728)||(51265442-51265587)
chr4 (607-721)||(47661863-47661977)
chr4 (616-728)||(53954640-53954752)
chr4 (570-727)||(35682150-35682307)
chr4 (579-697)||(26186043-26186159)
chr4 (616-698)||(55090022-55090104)
chr4 (610-697)||(40789203-40789290)
chr4 (616-697)||(47404612-47404693)
chr4 (589-697)||(47762611-47762719)
chr4 (579-721)||(44379923-44380065)
chr4 (662-727)||(51265442-51265507)
chr4 (579-643)||(6271783-6271847)
chr4 (579-643)||(42375091-42375155)
chr4 (662-721)||(3862622-3862681)
chr4 (662-721)||(3871379-3871438)
chr4 (662-721)||(23444345-23444404)
chr4 (618-697)||(52028581-52028660)
chr4 (662-727)||(6271699-6271764)
chr4 (575-632)||(19184492-19184549)
chr4 (583-672)||(30861826-30861915)
chr4 (637-697)||(50384132-50384192)
chr4 (647-710)||(25818387-25818450)
chr4 (662-728)||(26186090-26186156)
chr4 (674-728)||(30709988-30710042)
chr4 (662-727)||(30861850-30861915)
chr4 (576-641)||(44380013-44380078)
[»] scaffold0016 (1 HSPs)
scaffold0016 (616-728)||(49699-49811)
[»] scaffold0180 (2 HSPs)
scaffold0180 (657-725)||(19121-19189)
scaffold0180 (571-643)||(19107-19179)
[»] scaffold0047 (1 HSPs)
scaffold0047 (616-697)||(63787-63868)
[»] scaffold1033 (1 HSPs)
scaffold1033 (638-692)||(2265-2319)
[»] scaffold1029 (1 HSPs)
scaffold1029 (638-692)||(2265-2319)


Alignment Details
Target: chr2 (Bit Score: 774; Significance: 0; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 774; E-Value: 0
Query Start/End: Original strand, 96 - 958
Target Start/End: Original strand, 24115428 - 24116295
Alignment:
Q  96 gttttgatttttaaagctataagtttaactcacatctatgtcaagaagaataagctcaatggagttgaccctttcaggcaacagctcgctctcaacgttc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24115428 gttttgatttttaaagctataagtttaactcacatctatgtcaagaagaataagctcaatggagttgacccttccaggcaacagctcgctctcaacgttc 24115527  T
Q  196 cacattcttatgacccgaaacttcaccctccaatccatcctaccagttctcagagcattcaaactgctaaagagtatcaacattttgatctgatgcaaga 295  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||| |||||||    
T  24115528 cacattcttatgacccgaaccttcaccctccaatccatcctaccagttttcagagcattcaaactgctaaacggtatcaacattttgatctggtgcaaga 24115627  T
Q  296 gtctatttttgttggcaagagtttaataacagactacgaagaagataattatatggttaaacagggttaagtgttaacatgaaagaagataaaagaaact 395  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24115628 gtctatttttgttggcaagagtttaataatagactacgcagaagataattatatggttaaacagggttaagtgttaacatgaaagaagataaaagaaact 24115727  T
Q  396 atgttggagaa-gaaggaagaaaacattaa-tatcaccttattataatagttagactctacagggagagactcttccactgcttgtttcttctaagaaag 493  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24115728 atgttggagaaagaaggaagaaaacattaaatatcaccttattataatagttagactctacagggagagactcttccactgcttgtttcttctaagaaag 24115827  T
Q  494 gaagggtctagtataaatagagggaaaaaagaacaatacgtgcatcagaagccggatttgaaaaatgagttaaataatatatggatagcacttgtgtgag 593  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24115828 gaggggtctagtataaatagagggaaaaaagaacaatacgtgcatcagaagccggatttgaaaaatgagttaaataacatatggatagcacttgtgtgag 24115927  T
Q  594 atagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaata 693  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24115928 atagagttgagtcacattggtaacattggccaatcacaatgttacaatgcctgtgtttcacactctttcacaagcattgcgacattgtgattgaccaata 24116027  T
Q  694 tcactaatggcacccaactctatgtcacacaagtggcaacccaatacaatacaatgaaaataaaataataagcaacacatgtacaaaagtcatggaatca 793  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24116028 tcactaatggcacccaactctatgtcacacaagtggcaacccaatacaatacaatgacaataaaataataagcaacacatgtacaaaagtcatggaatca 24116127  T
Q  794 aagtgcatttattacgat---tactgcagcacaattcagaactaccaataactcattgtctaagagataatcaacatatgttcatcacaaatttctcagg 890  Q
    ||||||||||||||||||   ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24116128 aagtgcatttattacgattactactgtagcacaattcagaactaccactaactcattgtttaagagataatcaacatatgttcatcacaaatttctcagg 24116227  T
Q  891 atatatcaccacaaacataaagttcacattacaattttatcaatcattaaataattcaacaaatcaaa 958  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24116228 atatatcaccacaaacataaagttcacattacaattttatcaatcattaaataattcaacaaatcaaa 24116295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 813 - 958
Target Start/End: Original strand, 24111411 - 24111556
Alignment:
Q  813 actgcagcacaattcagaactaccaataactcattgtctaagagataatcaacatatgttcatcacaaatttctcaggatatatcaccacaaacataaag 912  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||    
T  24111411 actgcagcacaattcagaactaccactaactcattgtctaagagataatcaacatatgttcatgacaaatttctcaggatatatcgcaacaaacataaag 24111510  T
Q  913 ttcacattacaattttatcaatcattaaataattcaacaaatcaaa 958  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  24111511 ttcacattacaattttatcaatcattaaataattcaacaaatcaaa 24111556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 609 - 728
Target Start/End: Complemental strand, 14470707 - 14470588
Alignment:
Q  609 attggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcactaatggcaccc 708  Q
    |||||||||||| | |||||||||||| ||||||  | |||||| | |||||||||||||||||| ||||||||||||  |||| |||| |||| |||||    
T  14470707 attggtaacattagccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgcaacattgtgattggtcaatgtcaccaatgtcaccc 14470608  T
Q  709 aactctatgtcacacaagtg 728  Q
    ||||||||||||||||||||    
T  14470607 aactctatgtcacacaagtg 14470588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 607 - 728
Target Start/End: Original strand, 6721972 - 6722093
Alignment:
Q  607 acattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcactaatggcac 706  Q
    |||||||| ||||||  |||||||||| | ||||||| | |||||| | ||||||||||| ||||| ||||||||||||| ||||||||||||||| ||     
T  6721972 acattggtgacattgaccaatcacaatatcacaatgcttgtgtttctctctctttcacaaacattgtgacattgtgattggccaatatcactaatgtcaa 6722071  T
Q  707 ccaactctatgtcacacaagtg 728  Q
    ||||||||||||||| ||||||    
T  6722072 ccaactctatgtcacccaagtg 6722093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 624 - 721
Target Start/End: Complemental strand, 14229453 - 14229356
Alignment:
Q  624 caatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcac 721  Q
    |||||||||||| ||||||| | |||||| | ||||||||||||||||| ||||||||||||||||||| |||| |||| |||| |||||||||||||    
T  14229453 caatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgaccaatgtcaccaatgtcaccgaactctatgtcac 14229356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 583 - 728
Target Start/End: Original strand, 16514421 - 16514566
Alignment:
Q  583 acttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtg 682  Q
    ||||| |||| ||||||||| || |||||||| ||||||| ||||||| |||  | ||||| | |||||| | ||||||||||||||||| |||||||||    
T  16514421 acttgggtgacatagagttgggtgacattggtgacattggccaatcactatgccataatgcttgtgtttctctctctttcacaagcattgtgacattgtg 16514520  T
Q  683 attgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    ||||  |||| |||| |||  |||||||||||||||||| ||||||    
T  16514521 attggtcaatgtcaccaatctcacccaactctatgtcacccaagtg 16514566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 616 - 726
Target Start/End: Complemental strand, 6217332 - 6217222
Alignment:
Q  616 acattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactcta 715  Q
    ||||||| |||||||||||  ||||||  | |||||| | ||||||||||||||||| | ||||||||||| ||||| |||| |||| ||||||||||||    
T  6217332 acattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactcta 6217233  T
Q  716 tgtcacacaag 726  Q
    |||||| ||||    
T  6217232 tgtcacccaag 6217222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 624 - 728
Target Start/End: Original strand, 38933625 - 38933729
Alignment:
Q  624 caatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacac 723  Q
    |||||||||||  ||||||| | |||||| | ||||||||||||||||| |||||| |||||| ||||  |||| |||| |||||||||||||||||| |    
T  38933625 caatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattatgattggccaacgtcaccaatgtcacccaactctatgtcaccc 38933724  T
Q  724 aagtg 728  Q
    |||||    
T  38933725 aagtg 38933729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 583 - 721
Target Start/End: Complemental strand, 29508832 - 29508693
Alignment:
Q  583 acttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgaca-ttgt 681  Q
    ||||| |||| ||||||||| || | |||||| ||||||| |||||||||||   |||||| | |||||| | ||||||||||||||||| | || ||||    
T  29508832 acttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgccgcaatgcttgtgtttctctctctttcacaagcattgtggcatttgt 29508733  T
Q  682 gattgaccaatatcactaatggcacccaactctatgtcac 721  Q
    |||||  |||| |||| |||| ||||||||||||||||||    
T  29508732 gattggtcaatgtcaccaatgtcacccaactctatgtcac 29508693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 661 - 720
Target Start/End: Original strand, 33018620 - 33018679
Alignment:
Q  661 tcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtca 720  Q
    |||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||    
T  33018620 tcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtca 33018679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 609 - 686
Target Start/End: Complemental strand, 37762116 - 37762039
Alignment:
Q  609 attggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattg 686  Q
    |||||| |||| ||||||||||||| | ||||||| | ||||||   |||||||||||||||||||||||||||||||    
T  37762116 attggtgacatgggtcaatcacaatatcacaatgcttgtgtttctttctctttcacaagcattgcgacattgtgattg 37762039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 576 - 643
Target Start/End: Original strand, 14470582 - 14470649
Alignment:
Q  576 ggatagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgc 643  Q
    ||||||||||||||||| ||||||||| || |||||||| ||||||  ||||||||||||| ||||||    
T  14470582 ggatagcacttgtgtgacatagagttgggtgacattggtgacattgaccaatcacaatgttgcaatgc 14470649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 607 - 698
Target Start/End: Original strand, 15011301 - 15011392
Alignment:
Q  607 acattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcact 698  Q
    |||||||| | ||||| |||||||||||  ||||||  | |||||| | ||||||||||||||||| ||||||||||||| ||||| |||||    
T  15011301 acattggtgatattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcact 15011392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 663 - 721
Target Start/End: Original strand, 9173058 - 9173116
Alignment:
Q  663 acaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcac 721  Q
    |||||||||| | ||||||||||| |||||||||| |||| ||||||||||||||||||    
T  9173058 acaagcattgtggcattgtgattggccaatatcaccaatgtcacccaactctatgtcac 9173116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 616 - 697
Target Start/End: Original strand, 2828614 - 2828695
Alignment:
Q  616 acattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcac 697  Q
    ||||||| |||||||||||| | ||||| | |||||| | |||||||| |||||||| ||||||||||||| ||||| ||||    
T  2828614 acattggccaatcacaatgtcaaaatgcttgtgtttctctctctttcagaagcattgtgacattgtgattggccaatgtcac 2828695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 662 - 727
Target Start/End: Original strand, 29508767 - 29508832
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    ||||||||||||| ||||||||||| ||||| |||| |||  |||||||||||||||||| |||||    
T  29508767 cacaagcattgcggcattgtgattggccaatgtcaccaatatcacccaactctatgtcacccaagt 29508832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 616 - 692
Target Start/End: Original strand, 2893993 - 2894069
Alignment:
Q  616 acattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaat 692  Q
    ||||||| |||||||||| | ||||||| | | |||| | ||||||||||||||||| |||| ||||||||||||||    
T  2893993 acattggccaatcacaatctcacaatgcttgtatttctctctctttcacaagcattgtgacactgtgattgaccaat 2894069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 576 - 648
Target Start/End: Complemental strand, 32545936 - 32545864
Alignment:
Q  576 ggatagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatg 648  Q
    |||||||||||| |||| |||||||| ||| |||||||| ||||||| |||||| ||||| ||||||| ||||    
T  32545936 ggatagcacttgggtgacatagagtttagtgacattggtgacattggccaatcataatgtcacaatgcttatg 32545864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 647 - 728
Target Start/End: Original strand, 37961767 - 37961848
Alignment:
Q  647 tgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    |||||| | ||||||||||||||||| | |||||||||||  |||| |||| |||  ||| |||||||||||||| ||||||    
T  37961767 tgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacaaatatcactcaactctatgtcacccaagtg 37961848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 574 - 614
Target Start/End: Original strand, 14464552 - 14464592
Alignment:
Q  574 atggatagcacttgtgtgagatagagttgagtcacattggt 614  Q
    ||||||||||||||||||| |||||||||||| ||||||||    
T  14464552 atggatagcacttgtgtgacatagagttgagtgacattggt 14464592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 656 - 728
Target Start/End: Original strand, 32545858 - 32545930
Alignment:
Q  656 ctctttcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    |||||||| |||||||| |||||| |||||| ||||| |||| |||| |||  ||||||||||||| ||||||    
T  32545858 ctctttcataagcattgtgacattatgattggccaatgtcaccaatgtcactaaactctatgtcacccaagtg 32545930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 598 - 696
Target Start/End: Original strand, 8534158 - 8534256
Alignment:
Q  598 agttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatca 696  Q
    |||||||| |||||| | |||||| ||||| ||||||| | |||   | |||||| | || ||||||||| |||| |||||||| ||||||||||||||    
T  8534158 agttgagtgacattgatgacattgatcaattacaatgtaaaaatatttgtgtttctctctatttcacaagaattgtgacattgtaattgaccaatatca 8534256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 589 - 643
Target Start/End: Original strand, 14229356 - 14229410
Alignment:
Q  589 gtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgc 643  Q
    |||| ||||||||  || |||||||| |||||||||||||||||||| |||||||    
T  14229356 gtgacatagagttcggtgacattggtgacattggtcaatcacaatgtcacaatgc 14229410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 579 - 641
Target Start/End: Complemental strand, 14892405 - 14892343
Alignment:
Q  579 tagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaat 641  Q
    ||||| ||| |||| |||||||||  | |||||||| |||||| |||||||||||||||||||    
T  14892405 tagcatttgggtgacatagagttggatgacattggtgacattgatcaatcacaatgttacaat 14892343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 616 - 714
Target Start/End: Complemental strand, 29925678 - 29925580
Alignment:
Q  616 acattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactct 714  Q
    ||||||| |||||||||||  ||||||  | |||||| | ||||||||||||||||  ||||||||||  | ||||| |||| |||  |||||||||||    
T  29925678 acattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattctgacattgtgaggggccaatgtcaccaatatcacccaactct 29925580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 657 - 698
Target Start/End: Complemental strand, 14464622 - 14464581
Alignment:
Q  657 tctttcacaagcattgcgacattgtgattgaccaatatcact 698  Q
    ||||||||||| |||| ||||||||||||||||||| |||||    
T  14464622 tctttcacaagtattgtgacattgtgattgaccaatgtcact 14464581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 656 - 721
Target Start/End: Original strand, 14892330 - 14892395
Alignment:
Q  656 ctctttcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcac 721  Q
    |||||||| ||| ||||  ||||||||||||| |||| |||| |||| || |||||||||||||||    
T  14892330 ctctttcataagtattgtaacattgtgattgatcaatgtcaccaatgtcatccaactctatgtcac 14892395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 662 - 727
Target Start/End: Complemental strand, 16514486 - 16514421
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    ||||||||||  | ||| ||||||| ||||| |||| |||| |||||||||||||||||| |||||    
T  16514486 cacaagcattatggcatagtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagt 16514421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 594 - 643
Target Start/End: Complemental strand, 33018675 - 33018626
Alignment:
Q  594 atagagttgagtcacattggtaacattggtcaatcacaatgttacaatgc 643  Q
    ||||||||| || |||||||| | |||||||||||||||||| |||||||    
T  33018675 atagagttgggtgacattggtgatattggtcaatcacaatgtcacaatgc 33018626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 8e-39; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 579 - 725
Target Start/End: Original strand, 12913796 - 12913942
Alignment:
Q  579 tagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacat 678  Q
    |||||||||||||| ||| |||||||| |||||||| ||||||| |||||||||||| ||||| | | ||| || | ||||||||||||||||  |||||    
T  12913796 tagcacttgtgtgacatatagttgagtgacattggtgacattggccaatcacaatgtcacaattcttgtgtatctctctctttcacaagcattatgacat 12913895  T
Q  679 tgtgattgaccaatatcactaatggcacccaactctatgtcacacaa 725  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||    
T  12913896 tgtgattgaccaatatcaccaatgtcacccaactctatgtcacacaa 12913942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 574 - 697
Target Start/End: Original strand, 16439126 - 16439249
Alignment:
Q  574 atggatagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgc 673  Q
    ||||||||||||||  ||| ||||||||| || | |||||| |||||||||||||||||||| ||||||| | |||||| | |||||||||||||||||     
T  16439126 atggatagcacttggatgatatagagttgggtaatattggtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgt 16439225  T
Q  674 gacattgtgattgaccaatatcac 697  Q
    |||||||||||||| |||| ||||    
T  16439226 gacattgtgattgatcaatgtcac 16439249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 583 - 728
Target Start/End: Original strand, 19655155 - 19655300
Alignment:
Q  583 acttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtg 682  Q
    ||||| |||| ||||||||| || |||||||| ||||||| |||||||||||  ||||||  | |||||| | ||||||||||||||||| |||||||||    
T  19655155 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtgacattgtg 19655254  T
Q  683 attgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    ||||  |||| |||| |||| ||| |||||||||||||| ||||||    
T  19655255 attggacaatgtcaccaatgtcactcaactctatgtcacccaagtg 19655300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 607 - 728
Target Start/End: Original strand, 29699388 - 29699509
Alignment:
Q  607 acattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcactaatggcac 706  Q
    |||||||| ||||||| |||||||||||  ||||||| | |||||| | ||||||||||||||||| ||||||||||||| ||||| |||| |||  |||    
T  29699388 acattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcaccaatatcac 29699487  T
Q  707 ccaactctatgtcacacaagtg 728  Q
    ||||||||||||||| ||||||    
T  29699488 ccaactctatgtcacccaagtg 29699509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 583 - 728
Target Start/End: Original strand, 291094 - 291239
Alignment:
Q  583 acttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtg 682  Q
    ||||| |||| ||||||||| || |||||||| ||||||| |||||||||||  ||||||| | | ||||   ||||||||||| ||||| |||||||||    
T  291094 acttgagtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtatttctttctctttcacaaacattgtgacattgtg 291193  T
Q  683 attgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    ||||| |||| |||| |||| ||||||||||||| |||| ||||||    
T  291194 attgatcaatgtcaccaatgtcacccaactctatatcacccaagtg 291239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 616 - 728
Target Start/End: Original strand, 16971174 - 16971286
Alignment:
Q  616 acattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactcta 715  Q
    ||||||| |||||||||||  ||||||| | |||||| | ||||||||||||||||| |||||||||||||  |||| |||| |||| ||||||||||||    
T  16971174 acattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactcta 16971273  T
Q  716 tgtcacacaagtg 728  Q
    |||||| ||||||    
T  16971274 tgtcacccaagtg 16971286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 576 - 697
Target Start/End: Complemental strand, 3180207 - 3180087
Alignment:
Q  576 ggatagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcga 675  Q
    ||||||||||||||| | ||||||||| || |||||||| |||||||||||||||||||  ||||||| | |||||| | ||||||||||| ||||| ||    
T  3180207 ggatagcacttgtgtcacatagagttg-gtaacattggtgacattggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaaacattgtga 3180109  T
Q  676 cattgtgattgaccaatatcac 697  Q
    |||| ||||||| |||| ||||    
T  3180108 cattatgattgatcaatgtcac 3180087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 616 - 728
Target Start/End: Original strand, 3899869 - 3899981
Alignment:
Q  616 acattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactcta 715  Q
    ||||||| |||||||||||  ||||||| | |||||| | ||||||||||||||||| |||||||||||||  |||| |||| |||| ||||||||||||    
T  3899869 acattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactcta 3899968  T
Q  716 tgtcacacaagtg 728  Q
     ||||| ||||||    
T  3899969 agtcacccaagtg 3899981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 637 - 728
Target Start/End: Original strand, 2953241 - 2953332
Alignment:
Q  637 acaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    ||||||| | |||||| | ||||||||||||||||| ||||||||||||| ||||| |||| |||| |||||||||||||||||| ||||||    
T  2953241 acaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtg 2953332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 616 - 721
Target Start/End: Original strand, 28818947 - 28819052
Alignment:
Q  616 acattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactcta 715  Q
    |||||||||||||||||||| ||||| | | | |||| | ||||||||||||||||| |||||| |||||||||||| |||| |||  ||| ||||||||    
T  28818947 acattggtcaatcacaatgtcacaatacttgtatttctctctctttcacaagcattgtgacattatgattgaccaatgtcaccaatatcactcaactcta 28819046  T
Q  716 tgtcac 721  Q
    ||||||    
T  28819047 tgtcac 28819052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 624 - 728
Target Start/End: Original strand, 26662437 - 26662542
Alignment:
Q  624 caatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtga-ttgaccaatatcactaatggcacccaactctatgtcaca 722  Q
    |||||||||||||||| ||| | |||||| | || ||||||||| |||| |||||||||| ||||||||| |||| |||  |||||||||||| ||||||    
T  26662437 caatcacaatgttacattgcttgtgtttctctctttttcacaagtattgtgacattgtgatttgaccaatgtcaccaatatcacccaactctaagtcaca 26662536  T
Q  723 caagtg 728  Q
    ||||||    
T  26662537 caagtg 26662542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 624 - 728
Target Start/End: Original strand, 26934032 - 26934137
Alignment:
Q  624 caatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtga-ttgaccaatatcactaatggcacccaactctatgtcaca 722  Q
    |||||||||||||||| ||| | |||||| | || ||||||||| |||| |||||||||| ||||||||| |||| |||  |||||||||||| ||||||    
T  26934032 caatcacaatgttacattgcttgtgtttctctctttttcacaagtattgtgacattgtgatttgaccaatgtcaccaatatcacccaactctaagtcaca 26934131  T
Q  723 caagtg 728  Q
    ||||||    
T  26934132 caagtg 26934137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 594 - 721
Target Start/End: Complemental strand, 30117958 - 30117831
Alignment:
Q  594 atagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaata 693  Q
    |||||||||  | |||||||| | |||||||||||| ||||  ||||||| | |||||| | || ||||| || ||||| |||||||||||||  |||||    
T  30117958 atagagttggatgacattggtgatattggtcaatcataatgccacaatgcttgtgtttctctctttttcataaacattgtgacattgtgattggtcaata 30117859  T
Q  694 tcactaatggcacccaactctatgtcac 721  Q
    |||| |||| ||||||||||||| ||||    
T  30117858 tcaccaatgtcacccaactctatatcac 30117831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 647 - 728
Target Start/End: Complemental strand, 2094014 - 2093933
Alignment:
Q  647 tgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    |||||| | ||||||||||||||||  |||||||||||||| |||| |||| |||  |||||||||||||||||| ||||||    
T  2094014 tgtttctctctctttcacaagcattatgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtg 2093933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 583 - 671
Target Start/End: Original strand, 19598329 - 19598417
Alignment:
Q  583 acttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcatt 671  Q
    ||||| |||| ||||||||| || |||||||| ||||||||||||||||||   ||||||| | |||||| | ||||||||||||||||    
T  19598329 acttgggtgacatagagttgggtaacattggtgacattggtcaatcacaataccacaatgcttgtgtttctctctctttcacaagcatt 19598417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 610 - 728
Target Start/End: Original strand, 2356298 - 2356413
Alignment:
Q  610 ttggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcactaatggcaccca 709  Q
    ||||| ||||| | |||| ||||||||| ||||| | |||||| |  ||||||| |||||||| ||||| ||||||| ||||| |||| |||| || |||    
T  2356298 ttggtgacattaggcaattacaatgttataatgcttgtgtttctc--tctttcataagcattgtgacat-gtgattggccaatgtcaccaatgtcatcca 2356394  T
Q  710 actctatgtcacacaagtg 728  Q
    |||||||||||||||||||    
T  2356395 actctatgtcacacaagtg 2356413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 663 - 727
Target Start/End: Complemental strand, 291158 - 291094
Alignment:
Q  663 acaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    |||||||||| | ||||||||||| ||||| |||| |||| |||||||||||||||||| |||||    
T  291158 acaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcactcaagt 291094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 579 - 643
Target Start/End: Complemental strand, 2953335 - 2953271
Alignment:
Q  579 tagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgc 643  Q
    ||||||||| |||| ||||||||| || |||||||| ||||||| |||||||||||| |||||||    
T  2953335 tagcacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgtcacaatgc 2953271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 579 - 642
Target Start/End: Complemental strand, 291242 - 291179
Alignment:
Q  579 tagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatg 642  Q
    ||||||||| |||| ||||||||| || |||||||| |||||| ||||||||||||| ||||||    
T  291242 tagcacttgggtgatatagagttgggtgacattggtgacattgatcaatcacaatgtcacaatg 291179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 585 - 728
Target Start/End: Complemental strand, 12913942 - 12913799
Alignment:
Q  585 ttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgat 684  Q
    |||||||| ||||||||| || |||||||| | |||||||||||||||||| | ||||| | ||    | |    | |||||| |||| |||||||||||    
T  12913942 ttgtgtgacatagagttgggtgacattggtgatattggtcaatcacaatgtcataatgcttgtgaaagagagagatacacaagaattgtgacattgtgat 12913843  T
Q  685 tgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    || ||||| |||| |||| ||| ||||| |||||||||||||||    
T  12913842 tggccaatgtcaccaatgtcactcaactatatgtcacacaagtg 12913799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 618 - 693
Target Start/End: Complemental strand, 38134479 - 38134404
Alignment:
Q  618 attggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaata 693  Q
    ||||| |||||||||||| ||||||| | ||||||   ||||||||| ||||||| ||||||||||||| ||||||    
T  38134479 attggccaatcacaatgtcacaatgcttgtgtttctttctctttcactagcattgtgacattgtgattggccaata 38134404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 662 - 720
Target Start/End: Original strand, 30117904 - 30117962
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtca 720  Q
    ||||||||||| | |||| ||||||||||||||||| |||| || ||||||||||||||    
T  30117904 cacaagcattgtggcattatgattgaccaatatcaccaatgtcatccaactctatgtca 30117962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 662 - 727
Target Start/End: Complemental strand, 19598394 - 19598329
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    ||||||||||| |  |||||||||||||||| |||| ||||  ||||||||||||||||| |||||    
T  19598394 cacaagcattgtggtattgtgattgaccaatgtcaccaatgttacccaactctatgtcacccaagt 19598329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 662 - 727
Target Start/End: Complemental strand, 19655220 - 19655155
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    ||||| ||||| | ||||||||||| ||||| |||| |||| |||||||||||||||||| |||||    
T  19655220 cacaaacattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagt 19655155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 582 - 643
Target Start/End: Complemental strand, 19655300 - 19655239
Alignment:
Q  582 cacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgc 643  Q
    |||||| |||| |||||||||||| |||||||| ||||||  |||||||||||| |||||||    
T  19655300 cacttgggtgacatagagttgagtgacattggtgacattgtccaatcacaatgtcacaatgc 19655239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 574 - 643
Target Start/End: Complemental strand, 32485699 - 32485630
Alignment:
Q  574 atggatagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgc 643  Q
    ||||||| ||||||||||| | ||||||| || |||||||| |||||| ||||||||||| | |||||||    
T  32485699 atggataacacttgtgtgacacagagttgggtgacattggtgacattgatcaatcacaatatcacaatgc 32485630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 667 - 728
Target Start/End: Original strand, 32485630 - 32485691
Alignment:
Q  667 gcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    |||||| || ||||||||||| |||| |||| |||| ||||||||||| |||||||||||||    
T  32485630 gcattgtgatattgtgattgatcaatgtcaccaatgtcacccaactctgtgtcacacaagtg 32485691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 579 - 643
Target Start/End: Complemental strand, 16971289 - 16971225
Alignment:
Q  579 tagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgc 643  Q
    ||||||||| |||| ||||||||| || |||||||| ||||||  |||||||||||| |||||||    
T  16971289 tagcacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgc 16971225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 579 - 643
Target Start/End: Complemental strand, 29699512 - 29699448
Alignment:
Q  579 tagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgc 643  Q
    ||||||||| |||| ||||||||| || | |||||| ||||||| |||||||||||| |||||||    
T  29699512 tagcacttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgtcacaatgc 29699448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 721
Target Start/End: Complemental strand, 1638519 - 1638460
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcac 721  Q
    ||||| ||||| ||||||||||||| |||||||||| |||  ||||||||||||| ||||    
T  1638519 cacaaacattgtgacattgtgattggccaatatcacaaatatcacccaactctatatcac 1638460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 659 - 702
Target Start/End: Original strand, 7009401 - 7009444
Alignment:
Q  659 tttcacaagcattgcgacattgtgattgaccaatatcactaatg 702  Q
    |||||||||||||| || ||||||||||||||||||||| ||||    
T  7009401 tttcacaagcattgtgatattgtgattgaccaatatcaccaatg 7009444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 662 - 728
Target Start/End: Original strand, 3180136 - 3180201
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    ||||||||||| | ||||||||||||||||| |||| ||||  | |||||||||||| |||||||||    
T  3180136 cacaagcattgtggcattgtgattgaccaatgtcaccaatgtta-ccaactctatgtgacacaagtg 3180201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 662 - 716
Target Start/End: Complemental strand, 16439200 - 16439146
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctat 716  Q
    ||||||||||| ||||||||||||||||||| |||| |||   ||||||||||||    
T  16439200 cacaagcattgtgacattgtgattgaccaatgtcaccaatattacccaactctat 16439146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 589 - 643
Target Start/End: Complemental strand, 28819052 - 28818998
Alignment:
Q  589 gtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgc 643  Q
    |||| |||||||||||| | |||||| |||||||||||||| ||||| |||||||    
T  28819052 gtgacatagagttgagtgatattggtgacattggtcaatcataatgtcacaatgc 28818998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 579 - 648
Target Start/End: Complemental strand, 2356416 - 2356348
Alignment:
Q  579 tagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatg 648  Q
    |||||||||||||| |||||||||  | |||||||| ||||||| ||||||| |||| ||||||| ||||    
T  2356416 tagcacttgtgtgacatagagttggatgacattggtgacattggccaatcac-atgtcacaatgcttatg 2356348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 80; Significance: 5e-37; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 576 - 723
Target Start/End: Complemental strand, 7194 - 7048
Alignment:
Q  576 ggatagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcga 675  Q
    ||||| ||||||||||| ||||||||| || |||||||| ||||||| |||||||||||| ||||||| | |||||| | ||||||||||||||||| ||    
T  7194 ggataacacttgtgtgacatagagttg-gtgacattggtgacattggccaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtga 7096  T
Q  676 cattgtgattgaccaatatcactaatggcacccaactctatgtcacac 723  Q
    ||||||||||| | |||||||| |||| ||||||||||||||||||||    
T  7095 cattgtgattggctaatatcaccaatgtcacccaactctatgtcacac 7048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 662 - 728
Target Start/End: Original strand, 7123 - 7188
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    ||||||||||| ||||||||||||| ||||| |||| |||| || ||||||||||||||||||||||    
T  7123 cacaagcattgtgacattgtgattggccaatgtcaccaatgtca-ccaactctatgtcacacaagtg 7188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 5e-31; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 575 - 728
Target Start/End: Original strand, 17750892 - 17751044
Alignment:
Q  575 tggatagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcg 674  Q
    |||||||||||||||||| |||||||||| | |||||||| |||||||||||||||||||| ||||||  | | |||  | ||||||||||||||||| |    
T  17750892 tggatagcacttgtgtgacatagagttga-tgacattggtgacattggtcaatcacaatgtcacaatgtttgtatttatctctctttcacaagcattgtg 17750990  T
Q  675 acattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    |||||||||| | ||||| |||  |||  |||||||||||||||||||||||||    
T  17750991 acattgtgatcggccaatgtcatcaatatcacccaactctatgtcacacaagtg 17751044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 624 - 728
Target Start/End: Complemental strand, 24618701 - 24618597
Alignment:
Q  624 caatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacac 723  Q
    |||||||||||| ||||||| | |||||| | |||||||| |||||||  |||||||||||||| |||| |||| |||| |||||||||||||||||| |    
T  24618701 caatcacaatgtcacaatgcttgtgtttctctctctttcataagcattatgacattgtgattgatcaatgtcaccaatgtcacccaactctatgtcactc 24618602  T
Q  724 aagtg 728  Q
    |||||    
T  24618601 aagtg 24618597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 616 - 718
Target Start/End: Original strand, 12343130 - 12343232
Alignment:
Q  616 acattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactcta 715  Q
    ||||| |||||||||||||  ||||||| | |||||| | ||||||||||||||||| ||||||||||||| ||||| |||| |||  ||||||||||||    
T  12343130 acattagtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcaccaatctcacccaactcta 12343229  T
Q  716 tgt 718  Q
    |||    
T  12343230 tgt 12343232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 579 - 683
Target Start/End: Original strand, 24587454 - 24587558
Alignment:
Q  579 tagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacat 678  Q
    ||||||||  |||| ||||||||| || ||||| || |||||||||||||||||||| ||||||| | |||||| | || |||||||||||||| |||||    
T  24587454 tagcacttaggtgacatagagttgggtgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctcgctttttcacaagcattgtgacat 24587553  T
Q  679 tgtga 683  Q
    |||||    
T  24587554 tgtga 24587558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 662 - 721
Target Start/End: Complemental strand, 24587523 - 24587464
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcac 721  Q
    ||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  24587523 cacaagcattgtgacattgtgattgaccaatgtcactaatgtcacccaactctatgtcac 24587464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 616 - 697
Target Start/End: Complemental strand, 10521957 - 10521876
Alignment:
Q  616 acattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcac 697  Q
    |||||||||||||||||||| | ||||| | |||||| | |||||||| |||||||| ||||||||||||| ||||| ||||    
T  10521957 acattggtcaatcacaatgtcataatgcttgtgtttctctctctttcataagcattgtgacattgtgattggccaatgtcac 10521876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 609 - 697
Target Start/End: Complemental strand, 551280 - 551192
Alignment:
Q  609 attggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcac 697  Q
    |||||| ||||||| |||||||||||  ||||||| | |||||| | ||||||||||| ||||| | ||||||||||||||||| ||||    
T  551280 attggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaaacattgtggcattgtgattgaccaatgtcac 551192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 618 - 721
Target Start/End: Original strand, 13043489 - 13043592
Alignment:
Q  618 attggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatg 717  Q
    |||||||||||  ||||| ||||||| | |||||| | ||||||||||||||||| || |||||||||  ||||| |||| |||  ||| ||||||||||    
T  13043489 attggtcaatcgaaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgatattgtgattagccaatgtcaccaatatcactcaactctatg 13043588  T
Q  718 tcac 721  Q
    ||||    
T  13043589 tcac 13043592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 661 - 727
Target Start/End: Complemental strand, 24975815 - 24975749
Alignment:
Q  661 tcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    |||||||||||| | ||||||||||||||||| |||| |||| || ||||||||||||||| |||||    
T  24975815 tcacaagcattgtggcattgtgattgaccaatgtcaccaatgtcagccaactctatgtcacccaagt 24975749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 663 - 728
Target Start/End: Complemental strand, 17750963 - 17750899
Alignment:
Q  663 acaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    |||| ||||| ||||||||||||||||||| |||| |||| ||  |||||||||||||||||||||    
T  17750963 acaaacattgtgacattgtgattgaccaatgtcaccaatgtca-tcaactctatgtcacacaagtg 17750899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 579 - 648
Target Start/End: Original strand, 24618594 - 24618663
Alignment:
Q  579 tagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatg 648  Q
    ||||||||| |||| ||||||||| || |||||||| |||||| ||||||||||||| | ||||| ||||    
T  24618594 tagcacttgagtgacatagagttgggtgacattggtgacattgatcaatcacaatgtcataatgcttatg 24618663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 639 - 697
Target Start/End: Complemental strand, 2315389 - 2315331
Alignment:
Q  639 aatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcac 697  Q
    ||||| |||||||| | ||||||||||| ||||| |||||||||||||| |||| ||||    
T  2315389 aatgcttatgtttcgctctctttcacaaacattgtgacattgtgattgatcaatgtcac 2315331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 69; Significance: 2e-30; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 583 - 727
Target Start/End: Complemental strand, 27361 - 27217
Alignment:
Q  583 acttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtg 682  Q
    ||||| |||| ||||||||| || |||||||| | ||||| |||||||||||  ||||||| | |||||| | |||||||||||| |||  |||||||||    
T  27361 acttgggtgatatagagttgggtgacattggtgatattggccaatcacaatgccacaatgcttctgtttctctctctttcacaagaattatgacattgtg 27262  T
Q  683 attgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    |||| ||||||||||||||| |||||||||||||||||| |||||    
T  27261 attggccaatatcactaatgtcacccaactctatgtcacccaagt 27217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 665 - 727
Target Start/End: Original strand, 27299 - 27361
Alignment:
Q  665 aagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    |||||||| | ||||||||||| |||||||||| |||| ||||||||||||| |||| |||||    
T  27299 aagcattgtggcattgtgattggccaatatcaccaatgtcacccaactctatatcacccaagt 27361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 7e-30; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 575 - 698
Target Start/End: Original strand, 55223221 - 55223344
Alignment:
Q  575 tggatagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcg 674  Q
    |||||||||||||||||| ||||||||  || |||||||| | |||||||||||||||| ||| ||| | |||||||| | ||||||||||||||||| |    
T  55223221 tggatagcacttgtgtgacatagagttaggtgacattggtgatattggtcaatcacaatattagaatacttatgtttctctctctttcacaagcattgtg 55223320  T
Q  675 acattgtgattgaccaatatcact 698  Q
    ||||| ||||||||||||||||||    
T  55223321 acattatgattgaccaatatcact 55223344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 576 - 697
Target Start/End: Original strand, 33689166 - 33689287
Alignment:
Q  576 ggatagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcga 675  Q
    ||||| ||||||||||| ||||||||| || |||||| | | |||||||||||||||||| ||||||| | |||||| | ||||||||||||||||| ||    
T  33689166 ggataacacttgtgtgacatagagttgggtgacattgatgatattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtga 33689265  T
Q  676 cattgtgattgaccaatatcac 697  Q
    ||||||||||| ||||| ||||    
T  33689266 cattgtgattggccaatgtcac 33689287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 583 - 728
Target Start/End: Original strand, 41752961 - 41753106
Alignment:
Q  583 acttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtg 682  Q
    ||||| |||| ||||||||| || |||||||| ||||||| |||||||||||  ||||||  | ||||||   ||||||||||||||||| | |||||||    
T  41752961 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctttctctttcacaagcattgtggcattgtg 41753060  T
Q  683 attgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    |||| ||||| |||| |||| ||| |||||||||||||| ||||||    
T  41753061 attggccaatgtcaccaatgtcactcaactctatgtcacccaagtg 41753106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 589 - 710
Target Start/End: Complemental strand, 47492182 - 47492061
Alignment:
Q  589 gtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgac 688  Q
    |||| ||||||||| || |||||||| | ||||| |||||||||||| ||||||| | |||||| | || |||||||||||||| ||||||||||||| |    
T  47492182 gtgacatagagttgggtgacattggtcatattggccaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtgattggc 47492083  T
Q  689 caatatcactaatggcacccaa 710  Q
    |||| |||| |||| |||||||    
T  47492082 caatgtcaccaatgtcacccaa 47492061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 616 - 728
Target Start/End: Complemental strand, 1801554 - 1801442
Alignment:
Q  616 acattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactcta 715  Q
    ||||||| |||||||||||  ||||||  | |||||| | ||||||||||||||||| | ||||||||||| ||||| |||| |||| ||||||||||||    
T  1801554 acattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactcta 1801455  T
Q  716 tgtcacacaagtg 728  Q
    |||||| ||||||    
T  1801454 tgtcacccaagtg 1801442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 579 - 727
Target Start/End: Complemental strand, 30734547 - 30734399
Alignment:
Q  579 tagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacat 678  Q
    ||||||||| |||| ||||||||  || |||||||| ||||||| |||||||||||| | ||| | | |||||| |  |||||||||||||||| |||||    
T  30734547 tagcacttgggtgacatagagttaggtgacattggtgacattggccaatcacaatgtcataatacttgtgtttctctatctttcacaagcattgtgacat 30734448  T
Q  679 tgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    |||||| |  |||| |||  |||| |||| |||||||||||||||||||    
T  30734447 tgtgatcggtcaatgtcatcaatgtcaccaaactctatgtcacacaagt 30734399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 656 - 728
Target Start/End: Complemental strand, 45103177 - 45103105
Alignment:
Q  656 ctctttcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    ||||||||||||||||| |||||||||||||| ||||||||| |||| |||||||||||||||||| ||||||    
T  45103177 ctctttcacaagcattgtgacattgtgattgatcaatatcaccaatgtcacccaactctatgtcacccaagtg 45103105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 662 - 728
Target Start/End: Complemental strand, 33689238 - 33689172
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    ||||||||||| |||||||||||||||||||||||  |||| |||||||||||||||||||||||||    
T  33689238 cacaagcattgtgacattgtgattgaccaatatcatcaatgtcacccaactctatgtcacacaagtg 33689172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 616 - 697
Target Start/End: Complemental strand, 30476582 - 30476501
Alignment:
Q  616 acattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcac 697  Q
    |||||||||||||||||||| ||||||| | |||||| | ||||||||||||||||| ||||||||||||| ||||| ||||    
T  30476582 acattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcac 30476501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 618 - 697
Target Start/End: Complemental strand, 29031820 - 29031741
Alignment:
Q  618 attggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcac 697  Q
    |||||||||| ||||||| ||||||  | |||||| | ||||||||||||||||| ||||||||||||||||||||||||    
T  29031820 attggtcaattacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcac 29031741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 594 - 728
Target Start/End: Complemental strand, 30580886 - 30580752
Alignment:
Q  594 atagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaata 693  Q
    ||||| ||| || ||||| || |||||||||||||||||||| ||| ||| | ||||||   |||||||||||  |||| |||||| ||||||  |||||    
T  30580886 atagaattgggtgacatttgtgacattggtcaatcacaatgtcacagtgcttgtgtttctatctctttcacaaatattgtgacattatgattggtcaata 30580787  T
Q  694 tcactaatggcacccaactctatgtcacacaagtg 728  Q
    |||| |||| ||||||| |||||||||| ||||||    
T  30580786 tcaccaatgtcacccaattctatgtcactcaagtg 30580752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 594 - 728
Target Start/End: Original strand, 50524710 - 50524844
Alignment:
Q  594 atagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaata 693  Q
    |||||||||||| | | || | ||||||  |||||| ||||| ||||||  | |||||| | ||||||||||||||| |  |||||||||||||| ||||    
T  50524710 atagagttgagtgataatgatgacattgaccaatcataatgtcacaatgtttgtgtttctctctctttcacaagcatcgtaacattgtgattgactaata 50524809  T
Q  694 tcactaatggcacccaactctatgtcacacaagtg 728  Q
    |||| |||| ||| |||||||||||||| ||||||    
T  50524810 tcaccaatgtcactcaactctatgtcacccaagtg 50524844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 583 - 720
Target Start/End: Complemental strand, 51046214 - 51046077
Alignment:
Q  583 acttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtg 682  Q
    ||||| |||| |||||||||  | |||||||| ||||||| |||||||||||  | ||||| | |||||| | ||||||||||| ||||| |||||| ||    
T  51046214 acttgggtgacatagagttggatgacattggtgacattggccaatcacaatgccataatgcttgtgtttctctctctttcacaaacattgtgacattatg 51046115  T
Q  683 attgaccaatatcactaatggcacccaactctatgtca 720  Q
    ||||| |||| |||| |||  || ||||||||||||||    
T  51046114 attgatcaatgtcaccaatatcatccaactctatgtca 51046077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 589 - 689
Target Start/End: Complemental strand, 43139844 - 43139744
Alignment:
Q  589 gtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgac 688  Q
    |||| ||||||||| || |||||||| ||||||| |||| ||||||  ||||||| | |||||| | ||||||||||||||||  |||||||||||||||    
T  43139844 gtgacatagagttgggtgacattggtgacattggccaataacaatgccacaatgcttgtgtttctctctctttcacaagcattctgacattgtgattgac 43139745  T
Q  689 c 689  Q
    |    
T  43139744 c 43139744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 573 - 692
Target Start/End: Original strand, 18321638 - 18321757
Alignment:
Q  573 tatggatagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattg 672  Q
    ||||||||||||||| |  | ||||||||| || | |||||| |||||||||||||||||||| |||| |  | |||||  | || ||||||| ||||||    
T  18321638 tatggatagcacttgggcaacatagagttgggtgatattggtgacattggtcaatcacaatgtcacaaagtttgtgtttttctctttttcacatgcattg 18321737  T
Q  673 cgacattgtgattgaccaat 692  Q
     |||||||||||||||||||    
T  18321738 tgacattgtgattgaccaat 18321757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 662 - 721
Target Start/End: Original strand, 47492123 - 47492182
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcac 721  Q
    ||||||||||| ||||||||||||| ||||||| || |||| ||||||||||||||||||    
T  47492123 cacaagcattgtgacattgtgattggccaatatgaccaatgtcacccaactctatgtcac 47492182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 677 - 728
Target Start/End: Complemental strand, 55223279 - 55223228
Alignment:
Q  677 attgtgattgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    ||||||||||||||||||||| |||| |||| ||||||||||||||||||||    
T  55223279 attgtgattgaccaatatcaccaatgtcacctaactctatgtcacacaagtg 55223228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 575 - 684
Target Start/End: Complemental strand, 47677395 - 47677295
Alignment:
Q  575 tggatagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcg 674  Q
    |||||||||||||||||| |||||||||         ||| |||||| ||||||||||||| ||||||  | |||||| | ||||||||||||||||| |    
T  47677395 tggatagcacttgtgtgacatagagttg---------ggtgacattgatcaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtg 47677305  T
Q  675 acattgtgat 684  Q
    ||||||||||    
T  47677304 acattgtgat 47677295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 662 - 720
Target Start/End: Original strand, 30580832 - 30580890
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtca 720  Q
    |||||||| || ||||||||||||||||||| |||| |||| ||||||| |||||||||    
T  30580832 cacaagcactgtgacattgtgattgaccaatgtcacaaatgtcacccaattctatgtca 30580890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 577 - 643
Target Start/End: Complemental strand, 50524849 - 50524783
Alignment:
Q  577 gatagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgc 643  Q
    |||| |||||| |||| |||||||||||| |||||||| | ||| ||||||||||||||||| ||||    
T  50524849 gataacacttgggtgacatagagttgagtgacattggtgatattagtcaatcacaatgttacgatgc 50524783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 662 - 727
Target Start/End: Complemental strand, 41753026 - 41752961
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    ||||| ||||| | ||||||||||| ||||| |||| |||| |||||||||||||||||| |||||    
T  41753026 cacaaacattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagt 41752961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 582 - 643
Target Start/End: Complemental strand, 41753106 - 41753045
Alignment:
Q  582 cacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgc 643  Q
    |||||| |||| |||||||||||| |||||||| ||||||| |||||||||||  |||||||    
T  41753106 cacttgggtgacatagagttgagtgacattggtgacattggccaatcacaatgccacaatgc 41753045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 579 - 643
Target Start/End: Original strand, 45103102 - 45103166
Alignment:
Q  579 tagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgc 643  Q
    ||||||||| |||| ||||||||| || |||||||| | |||| ||||||||||||| |||||||    
T  45103102 tagcacttgggtgacatagagttgggtgacattggtgatattgatcaatcacaatgtcacaatgc 45103166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 609 - 697
Target Start/End: Original strand, 50549998 - 50550086
Alignment:
Q  609 attggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcac 697  Q
    |||||| ||||||  |||||||||| ||||||||| | |||||| | ||||||||||| ||||  |||||| ||||||| |||| ||||    
T  50549998 attggtgacattgaccaatcacaatattacaatgcttgtgtttctctctctttcacaaacattatgacattatgattgatcaatgtcac 50550086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 721
Target Start/End: Original strand, 43139785 - 43139844
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcac 721  Q
    ||||||||||| | |||||| |||| ||||| |||| |||| ||||||||||||||||||    
T  43139785 cacaagcattgtggcattgttattggccaatgtcaccaatgtcacccaactctatgtcac 43139844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 674 - 728
Target Start/End: Original strand, 30734490 - 30734544
Alignment:
Q  674 gacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    ||||||||||||| ||||| |||| |||| |||| ||||||||||||| ||||||    
T  30734490 gacattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtg 30734544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 582 - 643
Target Start/End: Original strand, 1801442 - 1801503
Alignment:
Q  582 cacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgc 643  Q
    |||||| |||| ||||||||| || |||||||| ||||||| |||||||||||  |||||||    
T  1801442 cacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgc 1801503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 616 - 697
Target Start/End: Complemental strand, 49418799 - 49418718
Alignment:
Q  616 acattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcac 697  Q
    |||||||||||| | ||| | | ||||| | |||||| | |||||||||||  |||  ||||||||||||||||||||||||    
T  49418799 acattggtcaattataatatcataatgcttgtgtttctctctctttcacaaatattatgacattgtgattgaccaatatcac 49418718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 662 - 727
Target Start/End: Original strand, 51046149 - 51046214
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    ||||||||||  | ||||||||||| ||||| |||| |||| || ||||||||||||||| |||||    
T  51046149 cacaagcattatggcattgtgattggccaatgtcaccaatgtcatccaactctatgtcacccaagt 51046214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 1e-28; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 583 - 728
Target Start/End: Original strand, 5033158 - 5033303
Alignment:
Q  583 acttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtg 682  Q
    ||||| |||| ||||||||| || |||||||| ||||||  |||||||||||  ||||||| | |||||| | ||||||||||||||||| |||||||||    
T  5033158 acttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtg 5033257  T
Q  683 attgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    ||||  |||| |||| |||| |||||||||||||||||| ||||||    
T  5033258 attggtcaatgtcaccaatgtcacccaactctatgtcacccaagtg 5033303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 583 - 728
Target Start/End: Complemental strand, 35441110 - 35440965
Alignment:
Q  583 acttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtg 682  Q
    ||||| |||| ||||||||| || |||||||| ||||||| |||||||||||  ||||||| | |||||| | ||||||||||||||||| |||||||||    
T  35441110 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtg 35441011  T
Q  683 attgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    ||||  |||| |||| |||| |||||||||||| ||||| ||||||    
T  35441010 attggtcaatgtcaccaatgtcacccaactctaagtcacccaagtg 35440965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 579 - 727
Target Start/End: Original strand, 5667090 - 5667238
Alignment:
Q  579 tagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacat 678  Q
    ||||||||| |||| |||||||||  | |||||||| |||||||||||||||||||| ||||||| | | |||| | ||||||||||||||||  |||||    
T  5667090 tagcacttgggtgacatagagttggatgacattggtgacattggtcaatcacaatgtcacaatgcttgtatttctctctctttcacaagcattatgacat 5667189  T
Q  679 tgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    ||| |||| ||||| |||| |||| || | ||||||||||||| |||||    
T  5667190 tgtaattggccaatgtcaccaatgtcatcaaactctatgtcacccaagt 5667238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 575 - 697
Target Start/End: Original strand, 34229630 - 34229752
Alignment:
Q  575 tggatagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcg 674  Q
    |||||||||||||||||| ||||||||| || ||||| || ||||  |||||||||||||| | ||||| | |||||| | ||||||||||||||||| |    
T  34229630 tggatagcacttgtgtgacatagagttgggtgacattagtgacatgagtcaatcacaatgtcagaatgcttgtgtttctctctctttcacaagcattgtg 34229729  T
Q  675 acattgtgattgaccaatatcac 697  Q
    | |||||||||||||||| ||||    
T  34229730 atattgtgattgaccaatgtcac 34229752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 583 - 728
Target Start/End: Complemental strand, 33841732 - 33841587
Alignment:
Q  583 acttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtg 682  Q
    ||||| |||| ||||||||| || |||||||| ||||||  |||||| ||||  ||||||| | |||||| | ||||||||||||||||| |||| ||||    
T  33841732 acttgggtgacatagagttgggtgacattggtgacattgaccaatcagaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacaatgtg 33841633  T
Q  683 attgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    ||||  |||| |||| |||| |||||||||||||||||| ||||||    
T  33841632 attggtcaatgtcaccaatgtcacccaactctatgtcacccaagtg 33841587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 583 - 720
Target Start/End: Original strand, 10086754 - 10086891
Alignment:
Q  583 acttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtg 682  Q
    ||||| |||| ||||| ||| || ||||| || |||||||||||||||||||| | ||||  | |||||| | ||||||||||| ||||| |||||||||    
T  10086754 acttgggtgacatagaattgggtgacattagtgacattggtcaatcacaatgtcataatgtttgtgtttctctctctttcacaaacattgtgacattgtg 10086853  T
Q  683 attgaccaatatcactaatggcacccaactctatgtca 720  Q
    ||||  |||| |||| |||| |||||||||||||||||    
T  10086854 attggtcaatgtcaccaatgtcacccaactctatgtca 10086891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 583 - 698
Target Start/End: Complemental strand, 8243529 - 8243414
Alignment:
Q  583 acttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtg 682  Q
    ||||| |||| ||||||||| || |||||||| || ||||||||||||||||  ||||||| | |||||| | ||||||||||||||||| | |||||||    
T  8243529 acttgggtgacatagagttgggtgacattggtgacgttggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtg 8243430  T
Q  683 attgaccaatatcact 698  Q
    ||||| |||| |||||    
T  8243429 attgatcaatgtcact 8243414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 576 - 724
Target Start/End: Original strand, 8796412 - 8796560
Alignment:
Q  576 ggatagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcga 675  Q
    ||||| |||||| |||| ||||||||  || | ||| || | |||||||||||||||||| ||||||| | |||||| |  |||||||||||||||| ||    
T  8796412 ggataacacttgggtgacatagagttaggtgatatttgtgatattggtcaatcacaatgtcacaatgcttgtgtttctctatctttcacaagcattgtga 8796511  T
Q  676 cattgtgattgaccaatatcactaatggcacccaactctatgtcacaca 724  Q
    |||| ||||||  |||| |||| |||  |||| | ||||||||||||||    
T  8796512 cattttgattggtcaatgtcaccaatatcacctagctctatgtcacaca 8796560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 662 - 728
Target Start/End: Complemental strand, 8796484 - 8796418
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    ||||||||||| |||||||||||||||||||||||| |||  |||| ||||||||||||| ||||||    
T  8796484 cacaagcattgtgacattgtgattgaccaatatcacaaatatcacctaactctatgtcacccaagtg 8796418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 662 - 728
Target Start/End: Complemental strand, 34229703 - 34229637
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    ||||||||||  |||||||||||||||  || ||||||||| |||||||||||||||||||||||||    
T  34229703 cacaagcattctgacattgtgattgactcatgtcactaatgtcacccaactctatgtcacacaagtg 34229637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 663 - 728
Target Start/End: Complemental strand, 5667158 - 5667093
Alignment:
Q  663 acaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    |||||||||| ||||||||||||||||||| |||| |||| || ||||||||||||||| ||||||    
T  5667158 acaagcattgtgacattgtgattgaccaatgtcaccaatgtcatccaactctatgtcacccaagtg 5667093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 576 - 720
Target Start/End: Complemental strand, 43844617 - 43844475
Alignment:
Q  576 ggatagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcga 675  Q
    |||||||| ||| |||| |||||||||  | |||||||| | |||| ||||||||||||| ||||||| | |||||  | |||| ||||||||||   ||    
T  43844617 ggatagcaattgggtgacatagagttggatgacattggtgatattgatcaatcacaatgtcacaatgcttgtgttt--ctctctctcacaagcatcctga 43844520  T
Q  676 cattgtgattgaccaatatcactaatggcacccaactctatgtca 720  Q
    |||| ||||| ||||||||||  |||  |||||||||||||||||    
T  43844519 cattatgattaaccaatatcatcaatatcacccaactctatgtca 43844475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 583 - 728
Target Start/End: Complemental strand, 45191268 - 45191123
Alignment:
Q  583 acttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtg 682  Q
    ||||| |||| |||||||||  | | |||||| ||||||  |||||| ||||||||||||  | |||||| | |||||||| |||||||| | |||||||    
T  45191268 acttgggtgacatagagttggatgatattggtgacattgaccaatcaaaatgttacaatgtttgtgtttctctctctttcataagcattgtggcattgtg 45191169  T
Q  683 attgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    ||| | |||| |||| |||  || ||||||||||||||| ||||||    
T  45191168 attaatcaatgtcaccaatatcatccaactctatgtcacccaagtg 45191123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 662 - 721
Target Start/End: Original strand, 43844545 - 43844604
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcac 721  Q
    ||||||||||| |||||||||||||| ||||||||| |||| || |||||||||||||||    
T  43844545 cacaagcattgtgacattgtgattgatcaatatcaccaatgtcatccaactctatgtcac 43844604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 624 - 721
Target Start/End: Original strand, 6296643 - 6296740
Alignment:
Q  624 caatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcac 721  Q
    |||||||||||| | ||||| | |||||| | |||||||||||| |||| |||||| | |||||| ||| ||||||||| || |||||||||| ||||    
T  6296643 caatcacaatgtcataatgcttgtgtttctctctctttcacaagtattgtgacattataattgactaatgtcactaatgtcatccaactctatatcac 6296740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 662 - 727
Target Start/End: Original strand, 8243464 - 8243529
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    ||||||||||| | ||||||||||||||||  |||| |||| |||||||||||||||||| |||||    
T  8243464 cacaagcattgtggcattgtgattgaccaacgtcaccaatgtcacccaactctatgtcacccaagt 8243529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 674 - 727
Target Start/End: Complemental strand, 10086807 - 10086754
Alignment:
Q  674 gacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    ||||||||||||||||||| ||||||||| ||||||| |||||||||| |||||    
T  10086807 gacattgtgattgaccaatgtcactaatgtcacccaattctatgtcacccaagt 10086754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 573 - 697
Target Start/End: Complemental strand, 35031766 - 35031641
Alignment:
Q  573 tatggatagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaa-tgcctatgtttcacactctttcacaagcatt 671  Q
    ||||| ||||||||  |||| |||||||||||| | ||| || | ||||||||| |||||| | | || || || | |||| | ||||||||||||||||    
T  35031766 tatgggtagcacttaggtgacatagagttgagtgatatttgtgatattggtcaaccacaatatcataagtgactttttttctctctctttcacaagcatt 35031667  T
Q  672 gcgacattgtgattgaccaatatcac 697  Q
    |||||||||||||||| |||| ||||    
T  35031666 gcgacattgtgattgatcaatgtcac 35031641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 662 - 727
Target Start/End: Original strand, 35441045 - 35441110
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    ||||||||||| | ||||||||||| ||||| |||| |||| |||||||||||||||||| |||||    
T  35441045 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagt 35441110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 576 - 728
Target Start/End: Original strand, 4958590 - 4958740
Alignment:
Q  576 ggatagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcga 675  Q
    ||||||||||||||||| ||||| ||  || | |||| | ||||||| |||||||||||| | ||||  | |||||| | |||||||||||| |||| ||    
T  4958590 ggatagcacttgtgtgacatagaattt-gtgatattgatgacattggccaatcacaatgtcataatgtttgtgtttctctctctttcacaagtattgtga 4958688  T
Q  676 cattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    | |||||||||  |||| ||||||||  || | ||||||||||||| ||||||    
T  4958689 c-ttgtgattggtcaatgtcactaatatcatctaactctatgtcacgcaagtg 4958740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 20557741 - 20557637
Alignment:
Q  136 tcaagaagaataagctcaatggagttgaccctttcaggcaacagctcgctctcaacgttccacattcttatgacccgaaacttcaccctccaatccatcc 235  Q
    ||||||||||| || || || |||||||||||  |||  || | ||| ||||||||  |||||||||||||||||| || | |||||||||| |||||||    
T  20557741 tcaagaagaatgagttccattgagttgaccctcccagaaaaaatctcactctcaacagtccacattcttatgaccctaaccctcaccctccagtccatcc 20557642  T
Q  236 tacca 240  Q
    |||||    
T  20557641 tacca 20557637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 662 - 727
Target Start/End: Complemental strand, 5033223 - 5033158
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    ||||||||||| | |||||||||||  |||| |||| |||| |||||||||||||||||| |||||    
T  5033223 cacaagcattgtggcattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 5033158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 579 - 643
Target Start/End: Complemental strand, 5033306 - 5033242
Alignment:
Q  579 tagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgc 643  Q
    ||||||||| |||| ||||||||| || |||||||| ||||||  |||||||||||| |||||||    
T  5033306 tagcacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgc 5033242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 662 - 727
Target Start/End: Complemental strand, 2581887 - 2581822
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    ||||||||||| | ||||||||||| ||||| |||  |||| ||||||| |||||||||| |||||    
T  2581887 cacaagcattgtggcattgtgattggccaatgtcaacaatgtcacccaattctatgtcacccaagt 2581822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 662 - 727
Target Start/End: Complemental strand, 22649907 - 22649842
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    ||||||||||| | ||||||||||  ||||| |||| |||| ||| |||||||||||||| |||||    
T  22649907 cacaagcattgtggcattgtgattagccaatgtcaccaatgtcactcaactctatgtcacccaagt 22649842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 662 - 727
Target Start/End: Original strand, 33841667 - 33841732
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    ||||||||||| | |||| ||||||  |||| |||| |||| |||||||||||||||||| |||||    
T  33841667 cacaagcattgtggcattctgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 33841732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 1e-28; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 583 - 728
Target Start/End: Original strand, 11016866 - 11017011
Alignment:
Q  583 acttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtg 682  Q
    ||||| |||| ||||||||| || |||||||| ||||||| |||||||||||  ||||||| | |||||| | ||||||||||| ||||| |||||||||    
T  11016866 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaaacattgtgacattgtg 11016965  T
Q  683 attgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    ||||  |||| |||| |||| |||||||||||||||||| ||||||    
T  11016966 attggtcaatgtcaccaatgtcacccaactctatgtcacccaagtg 11017011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 624 - 728
Target Start/End: Original strand, 42628333 - 42628437
Alignment:
Q  624 caatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacac 723  Q
    |||||||||||  ||||||| |||||||| | ||||||||||||||||| ||||||||||||| |||||||||| |||| |||||||||||||||||| |    
T  42628333 caatcacaatgccacaatgcttatgtttctctctctttcacaagcattgggacattgtgattggccaatatcaccaatgtcacccaactctatgtcaccc 42628432  T
Q  724 aagtg 728  Q
    |||||    
T  42628433 aagtg 42628437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 583 - 721
Target Start/End: Original strand, 38975802 - 38975940
Alignment:
Q  583 acttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtg 682  Q
    ||||| |||| ||||||||| || ||||||||||||||||||||||||||||  ||||||| | |||||| | ||||||||||||||||| | |||| |     
T  38975802 acttgggtgacatagagttgggtgacattggtaacattggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattata 38975901  T
Q  683 attgaccaatatcactaatggcacccaactctatgtcac 721  Q
    ||||| |||| |||| |||| |||| |||||||||||||    
T  38975902 attgatcaatgtcaccaatgtcacctaactctatgtcac 38975940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 583 - 728
Target Start/End: Original strand, 4290542 - 4290687
Alignment:
Q  583 acttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtg 682  Q
    ||||| |||| ||||||||| || | |||||| | |||||||||||||||||  |||||||   |||||| | |||||||||||| |||| |||||||||    
T  4290542 acttgggtgacatagagttgggtgatattggtgatattggtcaatcacaatgccacaatgctcgtgtttctctctctttcacaagaattgtgacattgtg 4290641  T
Q  683 attgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    |||| ||||| |||| |||| ||||||||| |||||||| ||||||    
T  4290642 attggccaatgtcaccaatgtcacccaactgtatgtcacccaagtg 4290687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 583 - 697
Target Start/End: Complemental strand, 41018369 - 41018255
Alignment:
Q  583 acttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtg 682  Q
    ||||| |||| ||||||||| || |||||||| ||||||  |||||||||||  ||||||| |||||||| | ||||||||||||||||| |||||||||    
T  41018369 acttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttatgtttctctctctttcacaagcattgggacattgtg 41018270  T
Q  683 attgaccaatatcac 697  Q
    |||| ||||| ||||    
T  41018269 attggccaatgtcac 41018255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 583 - 697
Target Start/End: Complemental strand, 34854836 - 34854722
Alignment:
Q  583 acttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtg 682  Q
    ||||| |||| ||||||||| || |||||||| |||||||||||||||||||  ||||||  | ||||||   ||||||||||||||||| | |||||||    
T  34854836 acttgggtgacatagagttgggtgacattggtgacattggtcaatcacaatgccacaatgtttgtgtttctatctctttcacaagcattgtggcattgtg 34854737  T
Q  683 attgaccaatatcac 697  Q
    |||| ||||| ||||    
T  34854736 attggccaatgtcac 34854722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 576 - 643
Target Start/End: Complemental strand, 41946003 - 41945936
Alignment:
Q  576 ggatagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgc 643  Q
    ||||| |||||| |||| ||| |||||||| |||||||||| ||||||||||||||||||||||||||    
T  41946003 ggataacacttgggtgacataaagttgagtgacattggtaatattggtcaatcacaatgttacaatgc 41945936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 583 - 666
Target Start/End: Complemental strand, 45231991 - 45231908
Alignment:
Q  583 acttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaa 666  Q
    ||||| |||| ||||||||| || |||||||| ||||||| |||||||||||||||||||| | |||||| | |||||||||||    
T  45231991 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgttacaatgcttttgtttctctctctttcacaa 45231908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 610 - 692
Target Start/End: Complemental strand, 27028907 - 27028825
Alignment:
Q  610 ttggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaat 692  Q
    ||||| |||||||||||||||||||| ||||||  | |||||| | |||||||| |||||||| ||||||||||||| |||||    
T  27028907 ttggtgacattggtcaatcacaatgtcacaatgtttgtgtttctctctctttcagaagcattgtgacattgtgattgtccaat 27028825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 616 - 697
Target Start/End: Original strand, 4649350 - 4649433
Alignment:
Q  616 acattggtcaatcacaatgttacaatgcctatgtttcacactct--ttcacaagcattgcgacattgtgattgaccaatatcac 697  Q
    ||||||||||||||||||| |||||||| | |||||| | ||||  ||||||||||| | ||||||||||||||||||| ||||    
T  4649350 acattggtcaatcacaatgctacaatgcttgtgtttctctctctctttcacaagcatcgtgacattgtgattgaccaatgtcac 4649433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 656 - 728
Target Start/End: Original strand, 41945925 - 41945997
Alignment:
Q  656 ctctttcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    |||||||||||||||||  |||||||||||||||||||| || |||| ||| ||||| |||||||| ||||||    
T  41945925 ctctttcacaagcattgtaacattgtgattgaccaatattaccaatgtcactcaactttatgtcacccaagtg 41945997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 656 - 727
Target Start/End: Complemental strand, 48000762 - 48000691
Alignment:
Q  656 ctctttcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    ||||||||||||||||| | |||||||||||| |||| |||| |||| |||||||||| ||||||| |||||    
T  48000762 ctctttcacaagcattgtggcattgtgattgatcaatgtcaccaatgtcacccaactcaatgtcacccaagt 48000691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 666 - 727
Target Start/End: Complemental strand, 4290603 - 4290542
Alignment:
Q  666 agcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    ||||||| | |||||||||||||||||||||| |||  |||||||||||||||||| |||||    
T  4290603 agcattgtggcattgtgattgaccaatatcaccaatatcacccaactctatgtcacccaagt 4290542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 662 - 727
Target Start/End: Complemental strand, 11016931 - 11016866
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    ||||||||||| | ||||||||||| ||||| |||| |||| |||||||||||||||||| |||||    
T  11016931 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagt 11016866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 662 - 727
Target Start/End: Original strand, 34854771 - 34854836
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    ||||| ||||| | ||||||||||||||||| |||| |||| |||||||||||||||||| |||||    
T  34854771 cacaaacattgtggcattgtgattgaccaatgtcaccaatgtcacccaactctatgtcacccaagt 34854836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 662 - 727
Target Start/End: Complemental strand, 38975867 - 38975802
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    ||||||||||| | ||||||||||||||||| | || |||| |||||||||||||||||| |||||    
T  38975867 cacaagcattgtggcattgtgattgaccaatgttaccaatgtcacccaactctatgtcacccaagt 38975802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 665 - 727
Target Start/End: Original strand, 45231929 - 45231991
Alignment:
Q  665 aagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    ||||||||  |||||||||||| ||||| |||| |||| |||||||||||||||||| |||||    
T  45231929 aagcattgtaacattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagt 45231991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 618 - 728
Target Start/End: Original strand, 48000769 - 48000879
Alignment:
Q  618 attggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatg 717  Q
    ||||| |||||||||||  ||||||  | |||||| | ||||||||||  ||||| | |||||||||||  |||| |||| |||| ||||||||||||||    
T  48000769 attggccaatcacaatgccacaatgtttgtgtttctctctctttcacagacattgtggcattgtgattggtcaatgtcaccaatgtcacccaactctatg 48000868  T
Q  718 tcacacaagtg 728  Q
    | || ||||||    
T  48000869 tgacccaagtg 48000879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 579 - 652
Target Start/End: Original strand, 27028721 - 27028794
Alignment:
Q  579 tagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttc 652  Q
    ||||||||  |||| ||| |||||||| |||||||| ||||||| |||||||||||| ||||||| | ||||||    
T  27028721 tagcactttggtgacatatagttgagtgacattggtgacattggacaatcacaatgtcacaatgcttgtgtttc 27028794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 616 - 697
Target Start/End: Complemental strand, 29053422 - 29053341
Alignment:
Q  616 acattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcac 697  Q
    ||||||| |||||||||||  ||||||  | |||||| | ||||||||||||||||| | ||||||||||| ||||| ||||    
T  29053422 acattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgaggcattgtgattggccaatgtcac 29053341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 616 - 684
Target Start/End: Original strand, 10419488 - 10419556
Alignment:
Q  616 acattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgat 684  Q
    |||||||||||||| ||||||||||| | | |||||| | ||||||||||||  ||| |||||||||||    
T  10419488 acattggtcaatcataatgttacaatacttgtgtttctctctctttcacaagttttgtgacattgtgat 10419556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 594 - 686
Target Start/End: Original strand, 15027550 - 15027642
Alignment:
Q  594 atagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattg 686  Q
    |||||||||  | |||||||| ||||||  ||||||||||   ||||||  | |||||| | ||||||||||||||||| |||||||||||||    
T  15027550 atagagttgtttgacattggtgacattgaccaatcacaataccacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattg 15027642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 579 - 642
Target Start/End: Complemental strand, 11017014 - 11016951
Alignment:
Q  579 tagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatg 642  Q
    ||||||||| |||| ||||||||| || |||||||| ||||||  |||||||||||| ||||||    
T  11017014 tagcacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatg 11016951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 721
Target Start/End: Complemental strand, 27028790 - 27028731
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcac 721  Q
    ||||||||||| ||||||||||||| ||||| |||| |||| ||| ||||| ||||||||    
T  27028790 cacaagcattgtgacattgtgattgtccaatgtcaccaatgtcactcaactatatgtcac 27028731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 579 - 641
Target Start/End: Complemental strand, 4290690 - 4290628
Alignment:
Q  579 tagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaat 641  Q
    ||||||||| |||| ||| ||||| || |||||||| ||||||| |||||||||||| |||||    
T  4290690 tagcacttgggtgacatacagttgggtgacattggtgacattggccaatcacaatgtcacaat 4290628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 616 - 686
Target Start/End: Complemental strand, 7672019 - 7671949
Alignment:
Q  616 acattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattg 686  Q
    ||||||| |||||||||||  ||||||  | |||||| | ||||||||||||||||| | |||||||||||    
T  7672019 acattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtggcattgtgattg 7671949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 665 - 727
Target Start/End: Original strand, 41018307 - 41018369
Alignment:
Q  665 aagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    |||||||| | |||||||||||  |||| |||| |||| |||||||||||||||||| |||||    
T  41018307 aagcattgtggcattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 41018369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 674 - 707
Target Start/End: Complemental strand, 43500034 - 43500001
Alignment:
Q  674 gacattgtgattgaccaatatcactaatggcacc 707  Q
    ||||||||||||||||||||||||||||| ||||    
T  43500034 gacattgtgattgaccaatatcactaatgtcacc 43500001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 1e-28; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 583 - 728
Target Start/End: Complemental strand, 48994058 - 48993913
Alignment:
Q  583 acttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtg 682  Q
    ||||| |||| ||||||||| || |||||||| ||||||  |||||||||||  ||||||| | |||||| | ||||||||||||||||| |||||||||    
T  48994058 acttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtg 48993959  T
Q  683 attgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    ||||  |||| |||| |||| |||||||||||||||||| ||||||    
T  48993958 attggtcaatgtcaccaatgtcacccaactctatgtcacccaagtg 48993913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 579 - 717
Target Start/End: Complemental strand, 32540893 - 32540755
Alignment:
Q  579 tagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacat 678  Q
    ||||||||| |||| ||||| |||  | |||||||| ||||||  |||||||||||||||||||| | |||||| | ||||||||||||||||| |||||    
T  32540893 tagcacttgggtgacatagaattggatgacattggtgacattgaccaatcacaatgttacaatgcttgtgtttctctctctttcacaagcattgtgacat 32540794  T
Q  679 tgtgattgaccaatatcactaatggcacccaactctatg 717  Q
    |||||||| |||||  ||| |||| ||||||||||||||    
T  32540793 tgtgattggccaatgccaccaatgtcacccaactctatg 32540755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 583 - 720
Target Start/End: Complemental strand, 29179738 - 29179601
Alignment:
Q  583 acttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtg 682  Q
    ||||| |||| ||||||||| || |||||||| ||||||| |||||||||||  ||||||| | |||||| | ||||||||||||||||| |||||||||    
T  29179738 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtg 29179639  T
Q  683 attgaccaatatcactaatggcacccaactctatgtca 720  Q
    ||||  || | |||| |||| |||||||||||||||||    
T  29179638 attggtcagtgtcaccaatgtcacccaactctatgtca 29179601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 576 - 727
Target Start/End: Complemental strand, 17127712 - 17127561
Alignment:
Q  576 ggatagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcga 675  Q
    ||||| |||||| |||| ||||||||  || ||||| || ||||||  |||||| ||||| ||||||| | |||||| | ||||||||||||||||| ||    
T  17127712 ggataacacttgggtgatatagagttaggtgacattagtgacattgaccaatcaaaatgtcacaatgcttgtgtttctctctctttcacaagcattgtga 17127613  T
Q  676 cattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    |||||||||||  |||| ||||||||| |||| |||||||| ||||||||||    
T  17127612 cattgtgattggtcaatgtcactaatgtcacctaactctatatcacacaagt 17127561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 607 - 728
Target Start/End: Original strand, 5995390 - 5995511
Alignment:
Q  607 acattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcactaatggcac 706  Q
    |||||||||||||||| |||||||||||  ||||||| | |||||| | ||||||||||||||||| | |||||||||||  |||| |||| |||| ||     
T  5995390 acattggtaacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcaccaatgtcat 5995489  T
Q  707 ccaactctatgtcacacaagtg 728  Q
    ||||||||||||||| ||||||    
T  5995490 ccaactctatgtcacccaagtg 5995511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 616 - 721
Target Start/End: Original strand, 15220841 - 15220946
Alignment:
Q  616 acattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactcta 715  Q
    ||||||||||||||| || | ||||||| | |||||| | ||||||||||||||||| || |||||||||| |||||||||| |||| ||||||||||||    
T  15220841 acattggtcaatcacgatctcacaatgcttgtgtttctctctctttcacaagcattgtgagattgtgattggccaatatcaccaatgtcacccaactcta 15220940  T
Q  716 tgtcac 721  Q
    ||||||    
T  15220941 tgtcac 15220946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 616 - 728
Target Start/End: Original strand, 29371398 - 29371510
Alignment:
Q  616 acattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactcta 715  Q
    ||||||| |||||||||||| ||||||  | |||||| | ||||||||||||||||| |||||||||||||  ||||||||| |||| |||| | |||||    
T  29371398 acattggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatatcaccaatgtcacctagctcta 29371497  T
Q  716 tgtcacacaagtg 728  Q
    |||||||||||||    
T  29371498 tgtcacacaagtg 29371510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 582 - 692
Target Start/End: Original strand, 9157306 - 9157416
Alignment:
Q  582 cacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgt 681  Q
    ||||||||||| ||||||||| || |||||||||||||||  |||||||||||| ||||||| | |||||| | ||||||| ||||||||| || |||||    
T  9157306 cacttgtgtgacatagagttgggtgacattggtaacattgaccaatcacaatgtcacaatgcttgtgtttctctctctttctcaagcattgtgatattgt 9157405  T
Q  682 gattgaccaat 692  Q
    |||||| ||||    
T  9157406 gattgatcaat 9157416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 576 - 697
Target Start/End: Original strand, 4608986 - 4609107
Alignment:
Q  576 ggatagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcga 675  Q
    ||||||||||||||||| || |||||| || |||| ||| ||||||  | |||||||||| ||||||  | |||||| | ||||||||||||||||| ||    
T  4608986 ggatagcacttgtgtgatatggagttgggtgacatcggtgacattgacccatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtga 4609085  T
Q  676 cattgtgattgaccaatatcac 697  Q
    ||||||||||||||||| ||||    
T  4609086 cattgtgattgaccaatgtcac 4609107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 616 - 728
Target Start/End: Original strand, 33219603 - 33219715
Alignment:
Q  616 acattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactcta 715  Q
    |||||| ||||||||||||||||||||| | |||||  | ||||||||||||||||  |||||||||||||| |||| |||| |||| || |||||||||    
T  33219603 acattgatcaatcacaatgttacaatgcttgtgtttttctctctttcacaagcattatgacattgtgattgatcaatgtcaccaatgtcatccaactcta 33219702  T
Q  716 tgtcacacaagtg 728  Q
    ||| || ||||||    
T  33219703 tgttacccaagtg 33219715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 583 - 697
Target Start/End: Original strand, 37155043 - 37155157
Alignment:
Q  583 acttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtg 682  Q
    ||||| |||| ||||||||  || |||||||| ||||||| |||||||||||| ||||||| | |||||| | |||||||||||| |||| |||||||||    
T  37155043 acttgggtgacatagagtttggtgacattggtgacattggccaatcacaatgtcacaatgcttgtgtttctctctctttcacaagtattgtgacattgtg 37155142  T
Q  683 attgaccaatatcac 697  Q
    |||| ||||| ||||    
T  37155143 attggccaatgtcac 37155157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 616 - 686
Target Start/End: Complemental strand, 741610 - 741540
Alignment:
Q  616 acattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattg 686  Q
    ||||||||| |||||||||| ||||||| | |||||| | ||||||||||||||||| |||||||||||||    
T  741610 acattggtcgatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattg 741540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 616 - 728
Target Start/End: Complemental strand, 49445019 - 49444909
Alignment:
Q  616 acattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactcta 715  Q
    ||||||| |||||||||||  ||||||| | |||||| | ||||  |||||||||||  ||||||||||||| | || |||| |||| ||||||||||||    
T  49445019 acattggccaatcacaatgccacaatgcttgtgtttctctctct--cacaagcattgtaacattgtgattgatcgatgtcaccaatgtcacccaactcta 49444922  T
Q  716 tgtcacacaagtg 728  Q
    |||||| ||||||    
T  49444921 tgtcacccaagtg 49444909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 582 - 686
Target Start/End: Complemental strand, 1091686 - 1091582
Alignment:
Q  582 cacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgt 681  Q
    |||||| |||| ||||||||| || | |||||| || |||  |||||||||||| ||||||  | |||||| | ||||||||||||||||| ||||||||    
T  1091686 cacttgggtgacatagagttgggtgatattggtgactttgaccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgt 1091587  T
Q  682 gattg 686  Q
    |||||    
T  1091586 gattg 1091582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 662 - 721
Target Start/End: Original strand, 44706860 - 44706919
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcac 721  Q
    ||||||||||||| ||||||||||| ||||| |||| |||| ||||||||||||||||||    
T  44706860 cacaagcattgcggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 44706919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 662 - 728
Target Start/End: Complemental strand, 9157372 - 9157306
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    ||||||||||| |||||||||||||  |||| | || |||| |||||||||||||||||||||||||    
T  9157372 cacaagcattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtg 9157306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 616 - 686
Target Start/End: Original strand, 34062239 - 34062309
Alignment:
Q  616 acattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattg 686  Q
    ||||||| |||||||||||  ||||||| |||||||| | ||||||||||| ||||| |||||||||||||    
T  34062239 acattggccaatcacaatgccacaatgcttatgtttctctctctttcacaaacattgtgacattgtgattg 34062309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 594 - 692
Target Start/End: Original strand, 45728295 - 45728393
Alignment:
Q  594 atagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaat 692  Q
    ||||||||| || | |||||| | ||||  |||||||||| | ||||||| | |||||| | ||||||||||||||||  |||||||||||||||||||    
T  45728295 atagagttgggtgatattggtgatattgaccaatcacaatatcacaatgcttgtgtttctctctctttcacaagcattatgacattgtgattgaccaat 45728393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 662 - 727
Target Start/End: Original strand, 29179673 - 29179738
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    ||||||||||| | ||||||||||| ||||| |||| |||| |||||||||||||||||| |||||    
T  29179673 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagt 29179738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 662 - 727
Target Start/End: Complemental strand, 37155108 - 37155043
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    ||||||||||| ||||||||||||| ||||| |||| |||| |||| ||||||||||||| |||||    
T  37155108 cacaagcattgtgacattgtgattggccaatgtcaccaatgtcaccaaactctatgtcacccaagt 37155043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 589 - 697
Target Start/End: Complemental strand, 44706919 - 44706810
Alignment:
Q  589 gtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgaca-ttgtgattga 687  Q
    |||| ||||||||| || |||||||| ||||||| |||||||||||   |||||| | |||||| | ||||||||||||||||| | || |||||||||     
T  44706919 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccgcaatgcttgtgtttctctctctttcacaagcattgtggcatttgtgattgg 44706820  T
Q  688 ccaatatcac 697  Q
    ||||| ||||    
T  44706819 ccaatgtcac 44706810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 574 - 643
Target Start/End: Original strand, 49444901 - 49444970
Alignment:
Q  574 atggatagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgc 643  Q
    |||| ||||||||| |||| ||||||||| || |||||||| |||| | |||||||||||||||||||||    
T  49444901 atgggtagcacttgggtgacatagagttgggtgacattggtgacatcgatcaatcacaatgttacaatgc 49444970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 618 - 697
Target Start/End: Complemental strand, 38674609 - 38674532
Alignment:
Q  618 attggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcac 697  Q
    ||||| |||||| ||||| ||||||| | |||||| |  |||||||||||||||| ||||||||||||| ||||||||||    
T  38674609 attggccaatcataatgtcacaatgcttgtgtttctc--tctttcacaagcattgtgacattgtgattggccaatatcac 38674532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 624 - 692
Target Start/End: Complemental strand, 46334046 - 46333978
Alignment:
Q  624 caatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaat 692  Q
    |||||||||||| ||||||| | |||||  | ||||||||||||||||| ||||||||||||| |||||    
T  46334046 caatcacaatgtcacaatgcttgtgtttttctctctttcacaagcattgtgacattgtgattggccaat 46333978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 662 - 728
Target Start/End: Complemental strand, 21630104 - 21630038
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    ||||||||||| |||||||||||||  |||| |||| |||| ||||||||| |||||||| ||||||    
T  21630104 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactttatgtcacgcaagtg 21630038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 624 - 697
Target Start/End: Complemental strand, 8337951 - 8337878
Alignment:
Q  624 caatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcac 697  Q
    |||||||||||  ||||||  | |||||| | ||||||||||| ||||| ||||||||||||||||||| ||||    
T  8337951 caatcacaatgccacaatgtttgtgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcac 8337878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 662 - 727
Target Start/End: Complemental strand, 46932059 - 46931994
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    ||||| ||||| | ||||||||||| ||||| |||| |||| |||||||||||||||||| |||||    
T  46932059 cacaaacattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagt 46931994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 624 - 697
Target Start/End: Original strand, 47303433 - 47303506
Alignment:
Q  624 caatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcac 697  Q
    |||||||||||| | ||||  | |||||| | ||||||||||| ||||| ||||||||||||||||||| ||||    
T  47303433 caatcacaatgtcataatgtttgtgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcac 47303506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 662 - 727
Target Start/End: Original strand, 48993993 - 48994058
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    ||||||||||| | |||||||||||  |||| |||| |||| |||||||||||||||||| |||||    
T  48993993 cacaagcattgtggcattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 48994058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 576 - 672
Target Start/End: Complemental strand, 36290555 - 36290459
Alignment:
Q  576 ggatagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattg 672  Q
    |||||| ||||| |||| ||||||||| || ||||||||  |||||  |||||||||||| |||||   | |||||| | |||||||||||||||||    
T  36290555 ggatagtacttgggtgacatagagttgggtgacattggtggcattgaccaatcacaatgtcacaatatttgtgtttctctctctttcacaagcattg 36290459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 579 - 643
Target Start/End: Original strand, 48993910 - 48993974
Alignment:
Q  579 tagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgc 643  Q
    ||||||||| |||| ||||||||| || |||||||| ||||||  |||||||||||| |||||||    
T  48993910 tagcacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgc 48993974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 583 - 686
Target Start/End: Original strand, 48498412 - 48498515
Alignment:
Q  583 acttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtg 682  Q
    ||||| |||| ||||||||| || ||||| || |||||||||||||| |||   ||||||  | |||||| | ||||||||||||||| |  ||||||||    
T  48498412 acttgggtgacatagagttgggtgacatttgtgacattggtcaatcataataccacaatgtttgtgtttctctctctttcacaagcatggtaacattgtg 48498511  T
Q  683 attg 686  Q
    ||||    
T  48498512 attg 48498515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 647 - 697
Target Start/End: Complemental strand, 1819566 - 1819516
Alignment:
Q  647 tgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcac 697  Q
    |||||| | ||||||||||||||||| |||||||||||||| |||| ||||    
T  1819566 tgtttctctctctttcacaagcattgtgacattgtgattgatcaatgtcac 1819516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 662 - 728
Target Start/End: Original strand, 17127640 - 17127706
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    ||||||||||| |||||| ||||||  |||| ||||||||| |||| |||||||| |||| ||||||    
T  17127640 cacaagcattgtgacattttgattggtcaatgtcactaatgtcacctaactctatatcacccaagtg 17127706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 576 - 662
Target Start/End: Original strand, 21630032 - 21630118
Alignment:
Q  576 ggatagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttc 662  Q
    ||||| |||||| |||| ||| ||||| || |||||||| ||||||  |||||||||||| ||||||| | |||||| | |||||||    
T  21630032 ggatatcacttgcgtgacataaagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgtttctctctctttc 21630118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 594 - 652
Target Start/End: Original strand, 28395645 - 28395703
Alignment:
Q  594 atagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttc 652  Q
    |||||||||||| |||||||| ||||||  |||||||||||| ||||||| | ||||||    
T  28395645 atagagttgagtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgtttc 28395703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 681 - 727
Target Start/End: Complemental strand, 48498458 - 48498412
Alignment:
Q  681 tgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    |||||||||||| |||| |||| |||||||||||||||||| |||||    
T  48498458 tgattgaccaatgtcacaaatgtcacccaactctatgtcacccaagt 48498412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 616 - 697
Target Start/End: Complemental strand, 48605055 - 48604974
Alignment:
Q  616 acattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcac 697  Q
    ||||||| |||| | ||||| ||||||| |  ||||| | |||||||||||  |||| ||||||||||||||||||| ||||    
T  48605055 acattggccaattataatgtcacaatgcttgcgtttctctctctttcacaaatattgtgacattgtgattgaccaatgtcac 48604974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 5e-28; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 616 - 728
Target Start/End: Original strand, 42375040 - 42375152
Alignment:
Q  616 acattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactcta 715  Q
    |||||||||||||||||||  ||||||| | |||||| | ||||||||||||||||| |||||||||||||| |||| |||| |||| ||||||||||||    
T  42375040 acattggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgatcaatgtcaccaatgtcacccaactcta 42375139  T
Q  716 tgtcacacaagtg 728  Q
    |||||| ||||||    
T  42375140 tgtcacccaagtg 42375152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 583 - 728
Target Start/End: Original strand, 6271699 - 6271844
Alignment:
Q  583 acttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtg 682  Q
    ||||| |||| ||||||||| || | |||||| ||||||| |||||||||||  ||||||| | |||||| | ||||||||||||||||| |||||||||    
T  6271699 acttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtg 6271798  T
Q  683 attgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    |||| ||||| |||| |||  ||| |||||||||||||| ||||||    
T  6271799 attggccaatgtcaccaatatcactcaactctatgtcacccaagtg 6271844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 589 - 718
Target Start/End: Complemental strand, 23444404 - 23444275
Alignment:
Q  589 gtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgac 688  Q
    |||| ||||||||| || |||||||| ||||||| |||||||||||  ||||||| | |||||| | ||||||||||||||||| |||||||||||||      
T  23444404 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggt 23444305  T
Q  689 caatatcactaatggcacccaactctatgt 718  Q
    |||| |||| |||| |||||||||||||||    
T  23444304 caatgtcaccaatgtcacccaactctatgt 23444275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 583 - 728
Target Start/End: Original strand, 51265442 - 51265587
Alignment:
Q  583 acttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtg 682  Q
    ||||| |||| ||||||||| || |||||||| ||||||| |||||||||||  ||||||| | |||||| | ||||||||||||||||| |||||| ||    
T  51265442 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattatg 51265541  T
Q  683 attgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    ||||  |||| |||| |||| |||||||||||| ||||| ||||||    
T  51265542 attggtcaatgtcaccaatgtcacccaactctaagtcacccaagtg 51265587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 607 - 721
Target Start/End: Original strand, 47661863 - 47661977
Alignment:
Q  607 acattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcactaatggcac 706  Q
    |||||||| ||||||| |||||||||||  ||||||| | |||||| | ||||||||||||||||| |||||||||||||  |||| |||| |||| |||    
T  47661863 acattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcaccaatgtcac 47661962  T
Q  707 ccaactctatgtcac 721  Q
    |||||||||||||||    
T  47661963 ccaactctatgtcac 47661977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 616 - 728
Target Start/End: Original strand, 53954640 - 53954752
Alignment:
Q  616 acattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactcta 715  Q
    ||||||| |||||||||||| |||||||   |||||| ||||||||||||||||||| |||||||| ||||  |||| |||| |||| ||||||||||||    
T  53954640 acattggccaatcacaatgtcacaatgctagtgtttctcactctttcacaagcattgtgacattgtaattggacaatgtcaccaatgtcacccaactcta 53954739  T
Q  716 tgtcacacaagtg 728  Q
    ||||||| |||||    
T  53954740 tgtcacaaaagtg 53954752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 570 - 727
Target Start/End: Original strand, 35682150 - 35682307
Alignment:
Q  570 atatatggatagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagca 669  Q
    |||||||| ||||||||| |||| ||||||||  || | |||||| ||||||| |||||||||||| | ||| | | |||||| |  |||||||||||||    
T  35682150 atatatgggtagcacttgggtgacatagagttaggtgatattggtgacattggccaatcacaatgtcataatacttgtgtttctctatctttcacaagca 35682249  T
Q  670 ttgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    ||| ||||||||||| |  |||| |||| |||| |||| |||||||||||||| ||||    
T  35682250 ttgtgacattgtgatcggtcaatgtcaccaatgtcacctaactctatgtcacataagt 35682307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 579 - 697
Target Start/End: Complemental strand, 26186159 - 26186043
Alignment:
Q  579 tagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacat 678  Q
    ||||||||| |||| ||||||||| || |||||| | ||||||| |||||||||| | ||||||| | |||||| |  |||||||||||||||| |||||    
T  26186159 tagcacttgggtgacatagagttgggtaacattgatgacattggccaatcacaatttcacaatgcttgtgtttctc--tctttcacaagcattgtgacat 26186062  T
Q  679 tgtgattgaccaatatcac 697  Q
    |||||||||||||| ||||    
T  26186061 tgtgattgaccaatgtcac 26186043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 616 - 698
Target Start/End: Complemental strand, 55090104 - 55090022
Alignment:
Q  616 acattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcact 698  Q
    |||||||||||||||||||| ||||||| | ||| || | ||||||||||||||||| ||||||||||||||||||| |||||    
T  55090104 acattggtcaatcacaatgtcacaatgcttgtgtctctctctctttcacaagcattgtgacattgtgattgaccaatgtcact 55090022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 610 - 697
Target Start/End: Original strand, 40789203 - 40789290
Alignment:
Q  610 ttggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcac 697  Q
    ||||| ||||||| |||||||||||| ||||||  | |||||| | ||||||||||||||||| ||||||||||||| ||||||||||    
T  40789203 ttggtgacattggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatatcac 40789290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 616 - 697
Target Start/End: Complemental strand, 47404693 - 47404612
Alignment:
Q  616 acattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcac 697  Q
    |||||||||||||||||||  ||||||| |  ||||| | ||||||||||||||||| ||||||||||||||||||| ||||    
T  47404693 acattggtcaatcacaatgccacaatgcttgggtttctctctctttcacaagcattgtgacattgtgattgaccaatgtcac 47404612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 589 - 697
Target Start/End: Original strand, 47762611 - 47762719
Alignment:
Q  589 gtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgac 688  Q
    |||| |||||| ||||| | ||| || ||||||  |||||||||||||||||||  |||||||| | ||||||||||||||||| |||||| || |||||    
T  47762611 gtgacatagagctgagtgatatttgtgacattgaccaatcacaatgttacaatgtttatgtttctctctctttcacaagcattgtgacattatggttgac 47762710  T
Q  689 caatatcac 697  Q
    |||| ||||    
T  47762711 caatgtcac 47762719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 579 - 721
Target Start/End: Original strand, 44379923 - 44380065
Alignment:
Q  579 tagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacat 678  Q
    |||||||||  ||| |||||||||||| |||||||  ||||||| |||| | ||||| ||||||| |  ||||| | || ||| | ||| ||||  ||||    
T  44379923 tagcacttggatgacatagagttgagtgacattggcgacattggccaattataatgtcacaatgcttgcgtttctctctattttataagtattgtaacat 44380022  T
Q  679 tgtgattgaccaatatcactaatggcacccaactctatgtcac 721  Q
    ||||||||  ||||||||| |||| ||| ||||||||||||||    
T  44380023 tgtgattggtcaatatcaccaatgtcactcaactctatgtcac 44380065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 662 - 727
Target Start/End: Complemental strand, 51265507 - 51265442
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    ||||||||||| | ||||||||||| ||||| |||| |||| |||||||||||||||||| |||||    
T  51265507 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagt 51265442  T

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Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 579 - 643
Target Start/End: Complemental strand, 6271847 - 6271783
Alignment:
Q  579 tagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgc 643  Q
    ||||||||| |||| |||||||||||| | |||||| ||||||| |||||||||||| |||||||    
T  6271847 tagcacttgggtgacatagagttgagtgatattggtgacattggccaatcacaatgtcacaatgc 6271783  T

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Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 579 - 643
Target Start/End: Complemental strand, 42375155 - 42375091
Alignment:
Q  579 tagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgc 643  Q
    ||||||||| |||| ||||||||| || |||||||| |||||| ||||||||||||| |||||||    
T  42375155 tagcacttgggtgacatagagttgggtgacattggtgacattgatcaatcacaatgtcacaatgc 42375091  T

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Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 662 - 721
Target Start/End: Original strand, 3862622 - 3862681
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcac 721  Q
    ||||||||||| | ||||||||||| ||||| |||| |||| ||||||||||||||||||    
T  3862622 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 3862681  T

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Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 662 - 721
Target Start/End: Original strand, 3871379 - 3871438
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcac 721  Q
    ||||||||||| | ||||||||||| ||||| |||| |||| ||||||||||||||||||    
T  3871379 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 3871438  T

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Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 662 - 721
Target Start/End: Original strand, 23444345 - 23444404
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcac 721  Q
    ||||||||||| | ||||||||||| ||||| |||| |||| ||||||||||||||||||    
T  23444345 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 23444404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 618 - 697
Target Start/End: Original strand, 52028581 - 52028660
Alignment:
Q  618 attggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcac 697  Q
    ||||| ||||||| |||| ||||||  | |||||| | ||||||||||||||||| ||||||||||||| ||||| ||||    
T  52028581 attggccaatcacgatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcac 52028660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 662 - 727
Target Start/End: Complemental strand, 6271764 - 6271699
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    ||||||||||| | ||||||||||| ||||| |||| |||  |||||||||||||||||| |||||    
T  6271764 cacaagcattgtggcattgtgattggccaatgtcaccaatatcacccaactctatgtcacccaagt 6271699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 575 - 632
Target Start/End: Original strand, 19184492 - 19184549
Alignment:
Q  575 tggatagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaa 632  Q
    ||||||||| ||| ||||||||||||| ||| |||||| | |||||||||||||||||    
T  19184492 tggatagcatttgggtgagatagagttaagtgacattgatgacattggtcaatcacaa 19184549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 583 - 672
Target Start/End: Complemental strand, 30861915 - 30861826
Alignment:
Q  583 acttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattg 672  Q
    ||||| |||| |||||||||  | | |||||| ||||||| |||||||||||  ||||||| | |||||| | |||||||||||||||||    
T  30861915 acttgggtgacatagagttggatgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattg 30861826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 637 - 697
Target Start/End: Complemental strand, 50384192 - 50384132
Alignment:
Q  637 acaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcac 697  Q
    ||||||| | |||||| | ||||||||||||||||| ||||||||||||| ||||| ||||    
T  50384192 acaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcac 50384132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 647 - 710
Target Start/End: Complemental strand, 25818450 - 25818387
Alignment:
Q  647 tgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaa 710  Q
    |||||| | ||||||||||| ||||| ||||||||||||||||||| |||  |||| |||||||    
T  25818450 tgtttctctctctttcacaatcattgtgacattgtgattgaccaatgtcatcaatgtcacccaa 25818387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 662 - 728
Target Start/End: Original strand, 26186090 - 26186156
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    ||||||||||| || |||||||||| ||||| |||  ||||  ||||||||||||||||| ||||||    
T  26186090 cacaagcattgtgaaattgtgattggccaatgtcatcaatgttacccaactctatgtcacccaagtg 26186156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 674 - 728
Target Start/End: Original strand, 30709988 - 30710042
Alignment:
Q  674 gacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagtg 728  Q
    ||||||||||||| ||||| |||| |||| |||| ||||||||||||| ||||||    
T  30709988 gacattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtg 30710042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 662 - 727
Target Start/End: Original strand, 30861850 - 30861915
Alignment:
Q  662 cacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 727  Q
    ||||||||||| | ||||||||||| ||||| |||| |||  || ||||||||||||||| |||||    
T  30861850 cacaagcattgtggcattgtgattggccaatgtcaccaatatcatccaactctatgtcacccaagt 30861915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 576 - 641
Target Start/End: Complemental strand, 44380078 - 44380013
Alignment:
Q  576 ggatagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaat 641  Q
    ||||| || ||| |||| |||||||||||| |||||||| | ||||  ||||||||||||||||||    
T  44380078 ggataacatttgggtgacatagagttgagtgacattggtgatattgaccaatcacaatgttacaat 44380013  T

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Target: scaffold0016 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 616 - 728
Target Start/End: Complemental strand, 49811 - 49699
Alignment:
Q  616 acattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactcta 715  Q
    ||||||| |||||||||||  ||||||| | |||||| |  |||||||||||||||| |||||||||||||  |||| |||  |||| ||||||||||||    
T  49811 acattggccaatcacaatgccacaatgcttgtgtttctctttctttcacaagcattgtgacattgtgattggtcaatgtcatcaatgtcacccaactcta 49712  T
Q  716 tgtcacacaagtg 728  Q
    |||||| ||||||    
T  49711 tgtcacccaagtg 49699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 657 - 725
Target Start/End: Complemental strand, 19189 - 19121
Alignment:
Q  657 tctttcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaa 725  Q
    |||| ||||||||||| |||||||||||||| ||||||||  |||| ||||||||||||||||||||||    
T  19189 tcttccacaagcattgtgacattgtgattgatcaatatcatcaatgtcacccaactctatgtcacacaa 19121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 571 - 643
Target Start/End: Original strand, 19107 - 19179
Alignment:
Q  571 tatatggatagcacttgtgtgagatagagttgagtcacattggtaacattggtcaatcacaatgttacaatgc 643  Q
    ||||| ||||||| |||||||| ||||||||| || |||||| | | |||| ||||||||||||| |||||||    
T  19107 tatatagatagcatttgtgtgacatagagttgggtgacattgatgatattgatcaatcacaatgtcacaatgc 19179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 616 - 697
Target Start/End: Original strand, 63787 - 63868
Alignment:
Q  616 acattggtcaatcacaatgttacaatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcac 697  Q
    ||||||| |||||||||||  ||||||  | |||||| | ||||||||||||||||| ||||||||||||| ||||| ||||    
T  63787 acattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcac 63868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1033 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 638 - 692
Target Start/End: Original strand, 2265 - 2319
Alignment:
Q  638 caatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaat 692  Q
    |||||| | |||||| | ||||||||||||||||| |||||||||||||| ||||    
T  2265 caatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgatcaat 2319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 638 - 692
Target Start/End: Original strand, 2265 - 2319
Alignment:
Q  638 caatgcctatgtttcacactctttcacaagcattgcgacattgtgattgaccaat 692  Q
    |||||| | |||||| | ||||||||||||||||| |||||||||||||| ||||    
T  2265 caatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgatcaat 2319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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