View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16637_low_4 (Length: 500)

Name: NF16637_low_4
Description: NF16637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16637_low_4
NF16637_low_4
[»] chr7 (6 HSPs)
chr7 (21-483)||(21823433-21823898)
chr7 (21-191)||(1449811-1449982)
chr7 (26-290)||(24881280-24881563)
chr7 (183-283)||(1450457-1450561)
chr7 (201-290)||(16955424-16955513)
chr7 (55-162)||(14609080-14609188)
[»] chr1 (4 HSPs)
chr1 (21-295)||(8542249-8542525)
chr1 (21-295)||(8607488-8607764)
chr1 (196-283)||(36301980-36302067)
chr1 (59-166)||(36301832-36301942)
[»] scaffold0001 (1 HSPs)
scaffold0001 (200-483)||(80451-80737)
[»] chr6 (1 HSPs)
chr6 (25-290)||(194694-194978)
[»] chr3 (3 HSPs)
chr3 (25-166)||(547365-547507)
chr3 (231-283)||(547566-547618)
chr3 (163-207)||(547524-547568)
[»] scaffold0118 (2 HSPs)
scaffold0118 (27-166)||(10073-10213)
scaffold0118 (212-296)||(9957-10041)
[»] chr4 (2 HSPs)
chr4 (25-166)||(16289159-16289301)
chr4 (210-295)||(16289373-16289458)


Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 21 - 483
Target Start/End: Original strand, 21823433 - 21823898
Alignment:
Q  21 atatccaaaaataagaccatgaaatgcaaccgaccaacctctaatattttatgaaccacaaatcatttttagaacatatataattatcaacatgtcaaat 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21823433 atatccaaaaataagaccatgaaatgcaaccgaccaacctctaatattttatgaaccacaaatcatttttagaacatatatagttatcaacatgtcaaat 21823532  T
Q  121 ctaataaacaaattctcataaccatcaacacaatattcaatcaaaattatataaaatcattgaatagaataaaacatagaaaaactaagtctttttaatg 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21823533 ctaataaacaaattctcataaccatcaacacaatattcaatcaaaattatataaaatcattgaatagaataaaacatagaaaaactaagcctttttaatg 21823632  T
Q  221 gacaagaattctactactatttcacaacacttatccggcctagaatgatggtgtggggaaaaagcccttagcttaagcactttactttctaacaaggact 320  Q
    || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  21823633 gataagaattctactactatttcacaatacttatccggcctagaatgatggtgtggggaaaaagcccttaccttaagcgctttactttctaacaaggact 21823732  T
Q  321 ---aatccacaaacccgctttgctacgctacgtctatactttcaaattggcttagataagaattcctctaactcttctcttccttgagtgaatcgtttat 417  Q
       |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  21823733 ttcaatccacaaaccggctttgctacgctacgtctatactttcaaattggcttagataagaattcctctaactcttctcttccttgagtgactcatttat 21823832  T
Q  418 aggggaatggaagtgggagtatagagttattctttgattctataaattacaaggttacacgataat 483  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21823833 aggggaatgaaagtgggagtatagggttattctttgattctataaattacaaggttacacgataat 21823898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 1449811 - 1449982
Alignment:
Q  21 atatccaaaaataagaccatgaaatgcaaccgaccaacctctaatattttatgaaccacaaatcatttttagaa-catatataattatcaacatgtcaaa 119  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| ||||||||||||||||    
T  1449811 atatccaaaaataagaccatgaaatacaaccgaccaacctctaatattttatgaaccaaaaatcatttttggaatcatatatagttatcaacatgtcaaa 1449910  T
Q  120 tctaataaacaaattctcataaccatcaacacaatattcaatcaaaattatataaaatcattgaatagaata 191  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  1449911 tctaataaacaaattctcaaaaccatcaacacaatattcaatcaaacttatataaaatcattaaatagaata 1449982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 26 - 290
Target Start/End: Complemental strand, 24881563 - 24881280
Alignment:
Q  26 caaaaataagaccatgaaatgcaaccgaccaacctctaatattttatgaaccacaaatcatttttagaa-catatataattatcaacatgtcaaatctaa 124  Q
    ||||||||| | |||||||||||||  | ||||| |||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||  ||||||||    
T  24881563 caaaaataaaatcatgaaatgcaacacatcaaccactaatattttgtgaaccacaaaccatttttagaatcatatatagttatcaacatgcaaaatctaa 24881464  T
Q  125 taaacaaattctcataaccatcaacacaatattcaatcaaaa--------------------ttatataaaatcattgaatagaataaaacatagaaaaa 204  Q
    |||  ||||||||||||| ||| |||||||||||||||||||                    ||| ||||| ||||| |||||||||||| |||||||||    
T  24881463 taataaaattctcataacaatcgacacaatattcaatcaaaacaagaagtcatacatataaattacataaagtcattaaatagaataaaatatagaaaaa 24881364  T
Q  205 ctaagtctttttaatggacaagaattctactactatttcacaacacttatccggcctagaatgatggtgtggggaaaaagccctta 290  Q
    |||| |||||  |||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||    
T  24881363 ctaactcttt--aatggataagaattctactactatttcacaacacttatcccacctagaatgatggtgtgggaaaaaagccctta 24881280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 183 - 283
Target Start/End: Original strand, 1450457 - 1450561
Alignment:
Q  183 aatagaataaaacatagaaaaa----ctaagtctttttaatggacaagaattctactactatttcacaacacttatccggcctagaatgatggtgtgggg 278  Q
    ||||||||||||||||||||||    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1450457 aatagaataaaacatagaaaaaaaaactaactctttttaatggacaagaattctactactatttcacaacacttatccgacctagaatgatggtgtgggg 1450556  T
Q  279 aaaaa 283  Q
    |||||    
T  1450557 aaaaa 1450561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 201 - 290
Target Start/End: Original strand, 16955424 - 16955513
Alignment:
Q  201 aaaactaagtctttttaatggacaagaattctactactatttcacaacacttatccggcctagaatgatggtgtggggaaaaagccctta 290  Q
    |||||||| |||||||| | |||||||||| |||||  |||||||||||||| ||||  |||  ||||||||||||| ||||||| ||||    
T  16955424 aaaactaactctttttagtagacaagaattttactagcatttcacaacacttgtccgatctaatatgatggtgtgggaaaaaagctctta 16955513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 162
Target Start/End: Complemental strand, 14609188 - 14609080
Alignment:
Q  55 caacctctaatattttatgaaccacaaatcatttttagaa-catatataattatcaacatgtcaaatctaataaacaaattctcataaccatcaacacaa 153  Q
    |||||||||||||||||| ||||||||| ||| |||| ||  ||||||| |||| || ||| ||||  |||||| |||||||||| ||| ||||||||||    
T  14609188 caacctctaatattttataaaccacaaaccatatttaaaattatatatagttatgaatatgccaaagataataatcaaattctcacaacaatcaacacaa 14609089  T
Q  154 tattcaatc 162  Q
     ||| ||||    
T  14609088 aatttaatc 14609080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 21 - 295
Target Start/End: Original strand, 8542249 - 8542525
Alignment:
Q  21 atatccaaaaataagaccatgaaatgcaaccgaccaacctctaatattttatgaaccacaaatcatttttagaa-catatataattatcaacatgtcaaa 119  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  8542249 atatccaaaaataaaaccatgaaatgcaaccaaccaacctctaatattttatgaaccacaaatcatttttagaatcatatatagttatcaacatgtcaaa 8542348  T
Q  120 tctaataaacaaattctcataaccatcaacacaatattcaatcaaaattatataaaatcattgaatagaataaaacatagaaaaactaagtctttttaat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8542349 tctaataaacaaattctcataaccatcaacacaatattcaatcaaaattatataaaatcattgaatagaataaaacatagaaaaactaagtctttttaat 8542448  T
Q  220 ggacaagaattctactactatttcacaacacttatccggcctagaatgatggtgt-ggggaaaaagcccttagctta 295  Q
    ||| |||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||| |||||| ||||    
T  8542449 ggataagaattctactactatttcacaacatttatccggcctaaaatgatggtgtgggggaaaaaacccttacctta 8542525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 21 - 295
Target Start/End: Original strand, 8607488 - 8607764
Alignment:
Q  21 atatccaaaaataagaccatgaaatgcaaccgaccaacctctaatattttatgaaccacaaatcatttttagaa-catatataattatcaacatgtcaaa 119  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  8607488 atatccaaaaataaaaccatgaaatgcaaccaaccaacctctaatattttatgaaccacaaatcatttttagaatcatatatagttatcaacatgtcaaa 8607587  T
Q  120 tctaataaacaaattctcataaccatcaacacaatattcaatcaaaattatataaaatcattgaatagaataaaacatagaaaaactaagtctttttaat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8607588 tctaataaacaaattctcataaccatcaacacaatattcaatcaaaattatataaaatcattgaatagaataaaacatagaaaaactaagtctttttaat 8607687  T
Q  220 ggacaagaattctactactatttcacaacacttatccggcctagaatgatggtgt-ggggaaaaagcccttagctta 295  Q
    ||| |||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||| |||||| ||||    
T  8607688 ggataagaattctactactatttcacaacatttatccggcctaaaatgatggtgtgggggaaaaaacccttacctta 8607764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 196 - 283
Target Start/End: Original strand, 36301980 - 36302067
Alignment:
Q  196 atagaaaaactaagtctttttaatggacaagaattctactactatttcacaacacttatccggcctagaatgatggtgtggggaaaaa 283  Q
    ||||||||||||| ||||| ||||| |||||||||||||||  ||||||||||||||||||| ||||| |||||||||||||||||||    
T  36301980 atagaaaaactaactctttctaatgaacaagaattctactatcatttcacaacacttatccgacctagtatgatggtgtggggaaaaa 36302067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 59 - 166
Target Start/End: Original strand, 36301832 - 36301942
Alignment:
Q  59 ctctaatattttatgaaccacaaatcattt-ttagaa-catatataattatcaacatgtcaaatctaataaacaaattc-tcataaccatcaacacaata 155  Q
    |||||||||||||||||||||||  ||||| |||||| |||||||| | ||||||||| ||||||||| || || |||| ||| ||   |||||||||||    
T  36301832 ctctaatattttatgaaccacaagccatttcttagaatcatatatagtcatcaacatgccaaatctaacaatcacattcttcacaatagtcaacacaata 36301931  T
Q  156 ttcaatcaaaa 166  Q
    |||||||||||    
T  36301932 ttcaatcaaaa 36301942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 200 - 483
Target Start/End: Complemental strand, 80737 - 80451
Alignment:
Q  200 aaaaactaagtctttttaatggacaagaattctactactatttcacaacacttatccggcctagaatgatggtgtggggaaaaagcccttagcttaagca 299  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||| |||  |      
T  80737 aaaaactaattctttttaatggacaagagttccactactatttcacaacacttatccgacctagaatgatagtgtggggaaaaagcacttaccttg-gtg 80639  T
Q  300 ctttactttctaacaaggact---aatccacaaacccgctttgctacgctacgtctatactttcaaattggcttagataagaattcctctaactcttctc 396  Q
    |||||||||||||||||||||   |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||    
T  80638 ctttactttctaacaaggactttcaatccaaaaaccggctttgctacgctacgtctatactttcaaattggcttagataaagattcctctagctcttctc 80539  T
Q  397 ttccttgagtgaatcgtttataggggaatggaagtgggagtatagagttattctttgattctataaattac-aaggttacacgataat 483  Q
    |||||||||||| |||||||| |||||||| ||||||||||||||  |||||||||||||||  ||||||| |||| |||||||||||    
T  80538 ttccttgagtgattcgtttatgggggaatgaaagtgggagtataggtttattctttgattctcgaaattacaaaggctacacgataat 80451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 25 - 290
Target Start/End: Complemental strand, 194978 - 194694
Alignment:
Q  25 ccaaaaataagaccatgaaatgcaaccgaccaacctctaatattttatgaaccacaaatcatttttagaa-catatataattatcaacatgtcaaatcta 123  Q
    |||||||||| | |||||||||||||| ||||| |||||||||||||||||||||||   |||||||||| |||||||| |||||||| || ||||||||    
T  194978 ccaaaaataaaatcatgaaatgcaacccaccaagctctaatattttatgaaccacaagctatttttagaatcatatatagttatcaacgtgccaaatcta 194879  T
Q  124 ataaacaaattctcataaccatcaacacaatattcaatca--------------------aaattatataaaatcattgaatagaataaaacatagaaaa 203  Q
    || | |||||||||| ||| ||||||||||||||||||||                    |||||| ||||| ||||| |||||||||| |||||| |||    
T  194878 atgatcaaattctcacaacaatcaacacaatattcaatcaccataagaagtcatacatataaattacataaagtcattaaatagaataatacatag-aaa 194780  T
Q  204 actaagtctttttaatggacaagaattctactactatttcacaacacttatccggcctagaatgatggtgtggggaaaaagccctta 290  Q
    ||||| |||||||||||||||||||||||||||  |||| ||||||||||||| |||||| ||||||||||| ||||||||| ||||    
T  194779 actaactctttttaatggacaagaattctactatcattttacaacacttatcc-gcctagtatgatggtgtgcggaaaaagctctta 194694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 25 - 166
Target Start/End: Original strand, 547365 - 547507
Alignment:
Q  25 ccaaaaataagaccatgaaatgcaaccgaccaacctctaatattttatgaaccacaaatcatttttagaac-atatataattatcaacatgtcaaatcta 123  Q
    |||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||  |||||||||||  ||||||| ||||||||||| ||||||||    
T  547365 ccaaaaataaaaccttgaaatgcaacccaccaacctctaatattttatgaaccacaagccatttttagaattatatatagttatcaacatgccaaatcta 547464  T
Q  124 ataaacaaattctcataaccatcaacacaatattcaatcaaaa 166  Q
    |||| |||||||||||||| |||||||||||||||||||||||    
T  547465 ataatcaaattctcataacaatcaacacaatattcaatcaaaa 547507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 547566 - 547618
Alignment:
Q  231 ctactactatttcacaacacttatccggcctagaatgatggtgtggggaaaaa 283  Q
    ||||||| ||||||||||||||||||||||||  |||||||||||||||||||    
T  547566 ctactaccatttcacaacacttatccggcctaatatgatggtgtggggaaaaa 547618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 547524 - 547568
Alignment:
Q  163 aaaattatataaaatcattgaatagaataaaacatagaaaaacta 207  Q
    ||||||| ||||||||||  |||||||||||||||||||||||||    
T  547524 aaaattacataaaatcatcaaatagaataaaacatagaaaaacta 547568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 27 - 166
Target Start/End: Complemental strand, 10213 - 10073
Alignment:
Q  27 aaaaataagaccatgaaatgcaaccgaccaacctctaatattttatgaaccacaaatcatttttagaa-catatataattatcaacatgtcaaatctaat 125  Q
    |||||||| |||||||||||||||| ||| |||||||||||||||||||||||||| |||||||| || |||||||| |||||||||||  |||||||||    
T  10213 aaaaataaaaccatgaaatgcaacccaccgacctctaatattttatgaaccacaaaccatttttaaaatcatatatagttatcaacatgcaaaatctaat 10114  T
Q  126 aaacaaattctcataaccatcaacacaatattcaatcaaaa 166  Q
    || ||||||||||||||||||| ||||||||||||||||||    
T  10113 aatcaaattctcataaccatcagcacaatattcaatcaaaa 10073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 212 - 296
Target Start/End: Complemental strand, 10041 - 9957
Alignment:
Q  212 tttttaatggacaagaattctactactatttcacaacacttatccggcctagaatgatggtgtggggaaaaagcccttagcttaa 296  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||| ||||||||||||| |||||    
T  10041 tttttaatggacaagaattctactactatttcacaacacttatgtggcctaaaatgatggtgtggtgaaaaagcccttaccttaa 9957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 25 - 166
Target Start/End: Original strand, 16289159 - 16289301
Alignment:
Q  25 ccaaaaataagaccatgaaatgcaaccgaccaacctctaatattttatgaaccacaaatcatttttagaa-catatataattatcaacatgtcaaatcta 123  Q
    |||||||||| |||||||||||||||| ||| |||||||||||||| |||||||||   |||||| | || |||||||| ||||||||| |  |||||||    
T  16289159 ccaaaaataaaaccatgaaatgcaacccaccgacctctaatattttgtgaaccacatgccattttcataatcatatatagttatcaacaaggaaaatcta 16289258  T
Q  124 ataaacaaattctcataaccatcaacacaatattcaatcaaaa 166  Q
    |||| |||||||| ||||  || |||||| |||||||||||||    
T  16289259 ataatcaaattcttataataatgaacacagtattcaatcaaaa 16289301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 210 - 295
Target Start/End: Original strand, 16289373 - 16289458
Alignment:
Q  210 tctttttaatggacaagaattctactactatttcacaacacttatccggcctagaatgatggtgtggggaaaaagcccttagctta 295  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||| |||| |||||| |||||| |||||||| |||| ||||    
T  16289373 tctttttaatggacaaaaattctactactattttacaacacttatccgacctaaaatgatagtgtggtgaaaaagctcttacctta 16289458  T

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