View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16637_low_5 (Length: 346)
Name: NF16637_low_5
Description: NF16637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16637_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 5 - 330
Target Start/End: Complemental strand, 48155486 - 48155161
Alignment:
| Q |
5 |
aagaaaagacatcaatattgtatttgtatctacttggggatggctattacgaagtttgtgtgctgtttaaaaatgtggcgctgctgcacgcggatgaata |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48155486 |
aagaaaagacatcaatattgtatttgtatctacttggggatggctattacaaattttgtgtgctgtttaaaaatgtggcgctgctgcacgcggataaata |
48155387 |
T |
|
| Q |
105 |
ccttgcacagctttccttccaatcatccagcagttgaattgctttcacacacttgacttgagtatttgtttctgatacattgttccaaagcttagtattt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
48155386 |
ccttgcacagctttccttccaatcatccagcagttgaattgctttcacacacttaacttgagtacttgtttctgatacattgttccaaagcttagtattt |
48155287 |
T |
|
| Q |
205 |
gctgttttcatatgctacaaactagagccgagaatttagcatcttaaacttcatcaaactaataaacaaaaggtggacttgattgatcaaagtggtggtg |
304 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48155286 |
gctgttttcatatgctacaaactatcgccgagaatttagcatcttaaacttcatcaaactaataaacaaaaggtggacttgattgatcaaagtggtggtg |
48155187 |
T |
|
| Q |
305 |
gaagtaaagaaagtgaagctaatgaa |
330 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
48155186 |
gaagtaaagaaagtgaagctaatgaa |
48155161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University