View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16637_low_7 (Length: 310)
Name: NF16637_low_7
Description: NF16637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16637_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 24 - 268
Target Start/End: Original strand, 17314109 - 17314353
Alignment:
| Q |
24 |
gccctctgtcctcaaccttaaatctcaccatcgtcgccactgtcgccctcagatataaccaccaccatcgccatctcttacactctcgtctcaccgtcac |
123 |
Q |
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|||||||||||||||||||||||||||||| || | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17314109 |
gccctctgtcctcaaccttaaatctcaccaccgccaccactgtcaccctcagatataaccaccaccatcgccatctcttacactctcgtctcaccatcac |
17314208 |
T |
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| Q |
124 |
caccgtcctcaccatcagttctcaccaccatcgtcattgtcgtcactctcaaatatcacgaccaccaccaccatcattgtcactcgcagatctaacaacc |
223 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
17314209 |
caccatcctcaccatcagttctcaccaccatcgtcattgtcgtcactctcaaatctcacgaccaccaccaccatcattgtcactctcagatctaacaacc |
17314308 |
T |
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| Q |
224 |
actatcactatctctcacgctcttgtgtcgccatcatccccattg |
268 |
Q |
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|||||||| ||||||||| |||| ||||||||||||||||||||| |
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| T |
17314309 |
actatcaccatctctcacactctcgtgtcgccatcatccccattg |
17314353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 22597978 - 22597906
Alignment:
| Q |
32 |
tcctcaaccttaaatctcaccatcgtcgccactgtcgccctcagatataaccaccaccatcgccatctcttac |
104 |
Q |
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|||||||||| ||||||||||| || |||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
22597978 |
tcctcaacctcaaatctcaccacaatcaccactgtctgcctcagatctaaccaccaccatcgccatctcttac |
22597906 |
T |
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