View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_high_13 (Length: 544)
Name: NF16638_high_13
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 16 - 538
Target Start/End: Original strand, 32120267 - 32120789
Alignment:
| Q |
16 |
aataatatattcttattacttaaattttgagaaaatgtttgctattaaacaagaccacaaatggaaaattataaacgtatatgtaattacccaatcaaca |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32120267 |
aataatatattcttattacttaaattttgagaaaatgtttgctattaaacaagaccacagatggaaaattataaacgtatatgtaattacccaatcaaca |
32120366 |
T |
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| Q |
116 |
agatgcttgtcatgggcacgagtttcatcatacgctctacgtccagtaattagctccaataacacaactccaaaactatagatgtcagatctcattgtta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32120367 |
agatgcttgtcatgggcacgagtttcatcatacgctctacgtccagtaattagctccaataacacaactccaaaactatagatgtcagatctcattgtta |
32120466 |
T |
|
| Q |
216 |
attttccagtagttgcatactcaggtgcacaataaccatgtgttcccatgactctagtagcaacatatgattgatctccagttggaccgaatttcgcaag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32120467 |
attttccagtagttgcatactcaggtgcacaataaccatgtgttcccatgactctagtagcaacatatgattgatctccagttggaccgaatttcgcaag |
32120566 |
T |
|
| Q |
316 |
gccgaaatcagaaagctttggatagaatccttcatccaataatatgttggatgatttcaaatctctatatataacagaaggctccgcttcatggtgaaga |
415 |
Q |
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| T |
32120567 |
gccgaaatcagaaagctttggatagaatccttcatccaataatatgttggatgatttcaaatctctatatataacagaaggctccgcttcatggtgaaga |
32120666 |
T |
|
| Q |
416 |
taatttagtcctcttgctgcccctacagctatcctcattctcgtattccaatcaagcggttcattatccggcaaaagatctgcaagtgacccgacaaaat |
515 |
Q |
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| T |
32120667 |
taatttagtcctcttgctgcccctacagctatcctcattctcgtattccaatcaagcggttcattatccggcaaaagatctgcaagtgacccgacaaaat |
32120766 |
T |
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| Q |
516 |
tgtaactaatacagtataatata |
538 |
Q |
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| T |
32120767 |
tgtaactaatacagtataatata |
32120789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 230 - 387
Target Start/End: Original strand, 40225164 - 40225321
Alignment:
| Q |
230 |
gcatactcaggtgcacaataaccatgtgttcccatgactctagtagcaacatatgattgatctccagttggaccgaatttcgcaaggccgaaatcagaaa |
329 |
Q |
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|||||||||||||||||||| |||| |||||||| || ||||| | || | || || ||||||||||||||| | || ||||| || |||||||| | |
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| T |
40225164 |
gcatactcaggtgcacaatagccataagttcccatcaccctagtggacacgtgtgttttatctccagttggaccaagctttgcaagtccaaaatcagaga |
40225263 |
T |
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| Q |
330 |
gctttggatagaatccttcatccaataatatgttggatgatttcaaatctctatatat |
387 |
Q |
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| T |
40225264 |
gttttggattgaaattttcatccaagagtatgtttgatgctttgaaatcacgatatat |
40225321 |
T |
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