View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16638_high_18 (Length: 510)
Name: NF16638_high_18
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_high_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 20 - 506
Target Start/End: Original strand, 1610472 - 1610958
Alignment:
| Q |
20 |
ggctcctggataaccatcagtatgatctgcatcctctgctcttcactacatacatccaacaacttctgtataagataatttccaaaaggactcatcataa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1610472 |
ggctcctggataaccatcagtatgatctgcatcctctgctcttcactacatacatccaacaacttccgtataagataatttccaaaaggactcatcataa |
1610571 |
T |
|
| Q |
120 |
gttcgaccacatgaccaatgatctcattaaatatcatttgaatatcttccattctaccctcattaaacattctctgcaagaacctgccgccattttgatc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
1610572 |
gttcgaccacatgaccaatgatctcattaaatatcatttgaatatcttccattctaccctcatcaaacattctctgcaagaacctgccgccattttgatc |
1610671 |
T |
|
| Q |
220 |
tttggccattaaatatatgcaccctcgagcttccatcagggaattatacttaggttgcatagtgaatggtgaaccagtcctagaacttctaggattttca |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1610672 |
tttggccattaaatatatgcaccctcgagcttccatcagggaattatacttaggttgcatagtgaatggtgaaccagtcctagaacttctaggattttca |
1610771 |
T |
|
| Q |
320 |
catgctcccacaacctgctgttgaatgtctagttctagcctatgtggatacttagcaaagccaaattcacgcgcggcattttgaaacctcaatcgatccg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1610772 |
catgctcccacaacctgctgttgaatgtctagttctggcctatgtggatacttagcaaagccaaattcacgcgcggcattttgaaacctcaatcgatccg |
1610871 |
T |
|
| Q |
420 |
aacctcttgcaccaacataatttaatccttcaccctgtaagatgaagctcccctcacttgtaacggaatccatatctatactttctt |
506 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1610872 |
aacctcttgcaccaacataaattaatccttcaccctgtaagatgaagctcccctcacttgtaacggaatccatatctatattttctt |
1610958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University