View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_high_20 (Length: 477)
Name: NF16638_high_20
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 57 - 465
Target Start/End: Original strand, 8261415 - 8261830
Alignment:
| Q |
57 |
cactctaatagaagtacctatttagtatcaatgcttatataaagcttataaagttaaaactggattgttttagaccaccaaattactataattttaatta |
156 |
Q |
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| T |
8261415 |
cactctaatagaagtacctatttagtatcaatgcttatataaagcttataaagttaaaactggattgttttagaccaccaaattactataattttaatta |
8261514 |
T |
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| Q |
157 |
aggcagcttgtgatggaactatttcccaaaaatacaaatgcataaaagttctttgttcataaaagcaagaatcggatattgttaccaactataactagaa |
256 |
Q |
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| T |
8261515 |
aggcagcttgtgatggaactatttctcaaaaatacaaatgcataaaagttctttgttcataaaagcaagaatcggatattgttaccaactataactagaa |
8261614 |
T |
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| Q |
257 |
tacaaccttatcaaaaaagtgatgaacctttaaaaagaatcaaactaaacataaagattgatttgtcttttcactttaatcaagtccctacctcccaaaa |
356 |
Q |
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| T |
8261615 |
tacaaccttatcaaaaaagtgatgaacctttaaaaagaatcaaactaaacataaagattgatttgtcttttcactttaatcaagtccctacctcccaaaa |
8261714 |
T |
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| Q |
357 |
ttgaaaagaaaaaagttatacaaatttcatacctaccttaccaaattcatatttcatattccactcccaagaaattgatcataa-------gtcacataa |
449 |
Q |
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| T |
8261715 |
ttgaaaagaaaaaagttatacaaatttcatacctaccttaccaaattcatatttcatattccactcccaagaaattgattataactccaacttcacataa |
8261814 |
T |
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| Q |
450 |
aacatatgcctatgct |
465 |
Q |
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| T |
8261815 |
aacatatgcctatgct |
8261830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 8261359 - 8261393
Alignment:
| Q |
1 |
ttccaagtaaagctcttcttctctatagatgccac |
35 |
Q |
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| T |
8261359 |
ttccaagtaaagctcttcttctctatagatgccac |
8261393 |
T |
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