View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_high_21 (Length: 476)
Name: NF16638_high_21
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Original strand, 33397736 - 33398197
Alignment:
| Q |
1 |
gtcaccgcggaagcacgagaggtcaagtgaagtaagatttgggaacctttggaagagacgagagaaggatgatggattgtagattaatgtgacggaatgc |
100 |
Q |
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| T |
33397736 |
gtcaccgcggaagcacgagaggtcaagtgaagtaagatttgggaacctttggaagagacgagagaaggatgatggattgtagattaatgtgacggaatgc |
33397835 |
T |
|
| Q |
101 |
acagaacggtttgttacgtcgagtagttgtttggacacaagggatagagtctctaagtaatgattactgttctcaacgttgaggttgttaaggagtttgg |
200 |
Q |
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| T |
33397836 |
acagaacggtttgttacgtcgagtagttgtttggacacaagggatagagtctctaagtaatgattacggttctcaacgttgaggttgttaaggagtttgg |
33397935 |
T |
|
| Q |
201 |
ataacacatattcccagcaatcatcctgtaaacctgctcctgcaattcttcttctggaacccatttctttcttctccttaaccctaactcttcgattcga |
300 |
Q |
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| T |
33397936 |
ataacacatattcccagcaatcatcctgtaaacctgctcctgcaattctttttctggaacccatttctttcttctccttaaccctaactcttcgattcga |
33398035 |
T |
|
| Q |
301 |
ttcgattcgattgtgtttctttagcccagagttgattggattggagtatattatatactagtgcttagcgcgttctgttcataaatcgtggaaaaacaaa |
400 |
Q |
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| T |
33398036 |
ttc-tgtcgattgtgtttctttagcccagagttgattggattggagtatattatatactagtacttagcgtgttctgttcataaatcgtggaaaaacaaa |
33398134 |
T |
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| Q |
401 |
accacctcagtcctgtctctgtcaataatttatttatgtccgcttatctttcttctttcttctct |
465 |
Q |
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| T |
33398135 |
accacctcagtcctg--tctgtcaataatttatttatgtccgcttatctttcttctttcttctct |
33398197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 157
Target Start/End: Complemental strand, 33707864 - 33707742
Alignment:
| Q |
35 |
agatttgggaacctttggaagagacgagagaaggatgatggattgtagattaatgtgacggaatgcacagaacggtttgttacgtcgagtagttgtttgg |
134 |
Q |
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||||||||||||||||||||||| ||||||| | | ||| |||||| |||||| | | ||||| | ||||| ||| || ||| ||||| |||||||| |
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| T |
33707864 |
agatttgggaacctttggaagaggcgagagagtggtaatgtattgtatattaatctcaaggaatatatagaactgttggtgacggagagtaattgtttgg |
33707765 |
T |
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| Q |
135 |
acacaagggatagagtctctaag |
157 |
Q |
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| T |
33707764 |
atacaagggatagagtctctaag |
33707742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 37579515 - 37579466
Alignment:
| Q |
194 |
agtttggataacacatattcccagcaatcatcctgtaaacctgctcctgc |
243 |
Q |
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| T |
37579515 |
agtttggatatcacatattcccagcaatcgtccggtaaaccacctcctgc |
37579466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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