View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_high_23 (Length: 458)
Name: NF16638_high_23
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 15 - 440
Target Start/End: Complemental strand, 49006441 - 49005998
Alignment:
| Q |
15 |
gatgaatatgtgaagccatggtggagtatttggtatggctttagtgcacaagcagaagtgttgaaaccatggaggcttaaatagagattcatgagttgat |
114 |
Q |
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| T |
49006441 |
gatgaatatgtgaagccatggtggagtatttggtatggctttagtgcacaagcagaagtgttgaaaccatggaggcttaaatagagattcatgagttgat |
49006342 |
T |
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| Q |
115 |
taagatccaagaggtaaggcacactaaatcaacatatttatcctcaaaattttacttacaaaattaacaacacaattttagaaattccaccnnnnnnnca |
214 |
Q |
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| T |
49006341 |
taagatccaagaggtaaggcacactaaatcaacatatttatcctcaaaatttgacttacaaaattaacaacacaattttagaaattccaccaaaaaaaca |
49006242 |
T |
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| Q |
215 |
cacaatttcaccaagatggg------------------tgatgaataatttattaaaaatttattttagaggagagactaaagtaacaaatgttttataa |
296 |
Q |
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| T |
49006241 |
cacaatttcaccaagatgggtagatctttcattgattttgatgaataatttaataaaaatttattttagaggagagactaaagtaacaaatgttttataa |
49006142 |
T |
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| Q |
297 |
tttaattcactaaattatcattttacatttttgaagaataatttttctaagtcttaaaatttcaaacaaaaatacaaatttaaattannnnnnnnaaact |
396 |
Q |
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| T |
49006141 |
tttaattcactaaattatcattttacatttttgaagaataatttttctaagccttaaaatttcaaacaaaaatacaaatttaaattattttttttaaact |
49006042 |
T |
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| Q |
397 |
cggtattcgatccaaagtgtaactaatttaagtggtgcaatccc |
440 |
Q |
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| T |
49006041 |
cggtattcgatccaaagtgtaactaatttaagtggtccaatccc |
49005998 |
T |
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