View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_high_26 (Length: 442)
Name: NF16638_high_26
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 436
Target Start/End: Original strand, 23843380 - 23843796
Alignment:
| Q |
19 |
aaaaatgacaacaatattcttagatttcacatggagaaatctcacattacaaaaacagtatttagaaatgaaatcctaacaacaagaacataaaaacaga |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| || ||||| |
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| T |
23843380 |
aaaaatgacaacaatattcttagatttcacatggagaaatctcacattacaaaaacattatttagaaatgaaatcctaacaacaaaaactcaatgacaga |
23843479 |
T |
|
| Q |
119 |
taagagtgcataaacataaaattctgactctcaatacactacatcagcagtacattgatctattttgaagccgcaagaaggctctcataacgacctttaa |
218 |
Q |
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||| | | |||||||||||| |||||||| || || ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23843480 |
taataattcataaacataaa-ttctgactttcggcactctatatcagcagtgcattgatctattttgaagccgcaagaaggctctcataacgacctttaa |
23843578 |
T |
|
| Q |
219 |
aaaaggcgaaaagaggctctctaggaggaatattttccttcacaataggatggtcaagaaattcttgactccaattgtaaagctttggaaacttttcagc |
318 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
23843579 |
aaaaggcgaaaagaggctctctaggaggaagagtttccttcacaacaggatggtcaagaaattcttgactccaattgtaaagctttgggaacttttcagc |
23843678 |
T |
|
| Q |
319 |
agtgaacaattgcagctcggttatgtcttgaactagagggacccaaaatgctacgaaaacagcagcaatatccacaaagttaaactcttctcctccaaag |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
23843679 |
tgtgaacaattgcagctcggttatgtcttgaactagagggacccaaaatgctacgaaaacagcagcaatatcgacaaagttaaactcttctcctccaaag |
23843778 |
T |
|
| Q |
419 |
tacttgtccttcatctca |
436 |
Q |
| |
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||||||||||||| |||| |
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| T |
23843779 |
tacttgtccttcagctca |
23843796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 23 - 436
Target Start/End: Original strand, 23839660 - 23840071
Alignment:
| Q |
23 |
atgacaacaatattcttagatttcacatggagaaatctcacattacaaaaacagtatttagaaatgaaatcctaacaacaagaacataaaaacagataag |
122 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| |||| | |||| |||||||||||||||||||||||||| || |||||||||| |
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| T |
23839660 |
atgacaacaatatccttagatttcacatggagaaatctcacattataaaat-attattcagaaatgaaatcctaacaacaagaactcaataacagataag |
23839758 |
T |
|
| Q |
123 |
agtgcataaacataaaattctgactctcaatacactacatcagcagtacattgatctattttgaagccgcaagaaggctctcataacgacctttaaaaaa |
222 |
Q |
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| | |||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
23839759 |
aattcataaacataaaattctgactctcgatattctatatcagcagtacattgatctattttgaagcagcaagaaggctctcatagcgacctttaaaaaa |
23839858 |
T |
|
| Q |
223 |
ggcgaaaagaggctctctaggaggaatattttccttcacaataggatggtcaagaaattcttgactccaattgtaaagctttggaaacttttcagcagtg |
322 |
Q |
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|||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
23839859 |
ggcgaaaagaggctctcttggaggaatagtttccttcacaacaggatggtcaagaaattcttgactccaattgtaaagctttggaaacttttcagctgtg |
23839958 |
T |
|
| Q |
323 |
aacaattgcagctcggttatgtcttgaactagagggacccaaaatgctacgaaaacagcagcaatatccacaaagttaaactcttctcctccaaagtact |
422 |
Q |
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|||||||||| | | ||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23839959 |
aacaattgcaaccctattatgtcttgaactagagggatcc-agatgctacgaaaacagcagcaatatccacaaagttaaactcttctcctccaaagtact |
23840057 |
T |
|
| Q |
423 |
tgtccttcatctca |
436 |
Q |
| |
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| |||||| |||| |
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| T |
23840058 |
tacccttcagctca |
23840071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 213 - 436
Target Start/End: Original strand, 23860707 - 23860930
Alignment:
| Q |
213 |
ctttaaaaaaggcgaaaagaggctctctaggaggaatattttccttcacaataggatggtcaagaaattcttgactccaattgtaaagctttggaaactt |
312 |
Q |
| |
|
|||| ||||| || |||||||| ||||||| ||| | || |||||||||| |||||||| ||||||||||| ||||| ||||||||||||||| |||| |
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| T |
23860707 |
ctttgaaaaatgcaaaaagagggtctctagcaggcacatgttccttcacagcaggatggttgagaaattcttggctccatttgtaaagctttggatactt |
23860806 |
T |
|
| Q |
313 |
ttcagcagtgaacaattgcagctcggttatgtcttgaactagagggacccaaaatgctacgaaaacagcagcaatatccacaaagttaaactcttctcct |
412 |
Q |
| |
|
||||||| ||||||||| || || | ||||||||||| | ||||| |||||| |||| ||| ||||||||||||||||||||||||| ||||||||| |
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| T |
23860807 |
ttcagcattgaacaatttcaattcagctatgtcttgaatcaaagggatccaaaaagctatgaacacagcagcaatatccacaaagttaatctcttctccc |
23860906 |
T |
|
| Q |
413 |
ccaaagtacttgtccttcatctca |
436 |
Q |
| |
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||||||||||||| ||||| |||| |
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| T |
23860907 |
ccaaagtacttgttcttcagctca |
23860930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 227 - 436
Target Start/End: Original strand, 23864267 - 23864476
Alignment:
| Q |
227 |
aaaagaggctctctaggaggaatattttccttcacaataggatggtcaagaaattcttgactccaattgtaaagctttggaaacttttcagcagtgaaca |
326 |
Q |
| |
|
|||||||| |||||| |||| | ||| ||||||||||| ||||||| ||||||||||| ||||| ||||||||||||||| ||||||||||||||||| |
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|
| T |
23864267 |
aaaagagggtctctaagaggcacattctccttcacaattggatggttgagaaattcttggctccatttgtaaagctttggatacttttcagcagtgaacc |
23864366 |
T |
|
| Q |
327 |
attgcagctcggttatgtcttgaactagagggacccaaaatgctacgaaaacagcagcaatatccacaaagttaaactcttctcctccaaagtacttgtc |
426 |
Q |
| |
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||| || | | ||| |||||||| | ||||| |||||| |||| ||| ||||||| |||||||||||| || ||| ||||| |||||| ||||||| |
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| T |
23864367 |
atttcaaccctattaagtcttgaaacaaagggatccaaaaagctatgaacacagcagaaatatccacaaaaccaatctcctctcccccaaagaacttgtc |
23864466 |
T |
|
| Q |
427 |
cttcatctca |
436 |
Q |
| |
|
||||| |||| |
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|
| T |
23864467 |
cttcagctca |
23864476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 230 - 436
Target Start/End: Original strand, 23856682 - 23856888
Alignment:
| Q |
230 |
agaggctctctaggaggaatattttccttcacaataggatggtcaagaaattcttgactccaattgtaaagctttggaaacttttcagcagtgaacaatt |
329 |
Q |
| |
|
||||| ||||||||||| ||||||||||| ||||| ||||||| ||||||||||| ||||| || |||| || ||| ||||||||||| | ||||||| |
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| T |
23856682 |
agaggttctctaggaggcatattttccttaacaattggatggttgagaaattcttggctccacttcgaaagtttgggacacttttcagcattcaacaatt |
23856781 |
T |
|
| Q |
330 |
gcagctcggttatgtcttgaactagagggacccaaaatgctacgaaaacagcagcaatatccacaaagttaaactcttctcctccaaagtacttgtcctt |
429 |
Q |
| |
|
||| | | ||||| ||||||| | ||||| |||||| |||| | | ||||| ||||||||||||| || ||| || ||||||||| |||||||||| |
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|
| T |
23856782 |
gcaaccctgttatttcttgaatcaaagggatccaaaaagctatgtacacagctgcaatatccacaattccaatctcctcacctccaaagaacttgtcctt |
23856881 |
T |
|
| Q |
430 |
catctca |
436 |
Q |
| |
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|| |||| |
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| T |
23856882 |
caactca |
23856888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 436
Target Start/End: Complemental strand, 23853367 - 23853310
Alignment:
| Q |
379 |
agcagcaatatccacaaagttaaactcttctcctccaaagtacttgtccttcatctca |
436 |
Q |
| |
|
||||||||||||||||||| ||| ||| |||||||||||| |||||||||||| |||| |
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|
| T |
23853367 |
agcagcaatatccacaaagctaatctcctctcctccaaagaacttgtccttcagctca |
23853310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 436
Target Start/End: Complemental strand, 23850976 - 23850919
Alignment:
| Q |
379 |
agcagcaatatccacaaagttaaactcttctcctccaaagtacttgtccttcatctca |
436 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||| |||||||||||| |||| |
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|
| T |
23850976 |
agcagcaatatccacaaagcctatttcttctcctccaaagaacttgtccttcagctca |
23850919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 431
Target Start/End: Complemental strand, 23855890 - 23855838
Alignment:
| Q |
379 |
agcagcaatatccacaaagttaaactcttctcctccaaagtacttgtccttca |
431 |
Q |
| |
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|||||||||||||||||| || |||||||||||||||| ||||||| |||| |
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|
| T |
23855890 |
agcagcaatatccacaaaaccaatctcttctcctccaaagaacttgtcattca |
23855838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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