View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_high_28 (Length: 433)
Name: NF16638_high_28
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 4776299 - 4775881
Alignment:
| Q |
1 |
ctgtgtctactcccatggccacctcattctgctcacaacctaaacctgactccacatactgtgatagtaaggaatttcgcagtatacttggtgccttaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
4776299 |
ctgtgtctactcccatggccacctcattctgctcacaacctaaacccgactccacatactgtgacagtaaggaatttcgcagtatgcttggtgccttaca |
4776200 |
T |
|
| Q |
101 |
ttacctttcaatcacacgcccggacatagcattcccggtgaataaactagcacaacaaatgcaagctcctactgtgacagatatgcaagccttaaataga |
200 |
Q |
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|||||||||||||| ||||| ||||| ||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
4776199 |
ctacctttcaatcactcgcccagacattgcatttccagtgaataaactagcataacaaatgcaagctcctactgtgacagatatgcaagccttgaagaga |
4776100 |
T |
|
| Q |
201 |
gtattgcgctatctcaaatccaccatctccaatggactccatctcacgagatcttcaaatacaagcctcacaagcttttgtgatgcagattgggctggag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||| |||| |
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| T |
4776099 |
gtattgcgctatctcaaatccaccatctccaatggactccatctcacaagatcttcaaatacaaacctcacaagcttttgtgatgcagattaggcaggag |
4776000 |
T |
|
| Q |
301 |
acacaattgatcggaaatcgacaggtgcttatttaatttattttggccctaatattatctcttggtcatgcaagaagcagccaactgttgcaaaatcgtc |
400 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
4775999 |
acacaattgacaggaaatcaacaggtgcttatttaatttattttggccctaatattatctcttggtcatgcaagaagcaaccaacaattgcaaaatcgtc |
4775900 |
T |
|
| Q |
401 |
aactgaagctgaatatcgt |
419 |
Q |
| |
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| T |
4775899 |
aactgaagctgaatatcgt |
4775881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 261 - 418
Target Start/End: Complemental strand, 43061400 - 43061243
Alignment:
| Q |
261 |
acaagcctcacaagcttttgtgatgcagattgggctggagacacaattgatcggaaatcgacaggtgcttatttaatttattttggccctaatattatct |
360 |
Q |
| |
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||||||||||||| ||||||||||||||||||||| |||||||||||||| ||| || |||||||||||||| ||||||||||||||||||||||||| |
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| T |
43061400 |
acaagcctcacaaacttttgtgatgcagattgggcaggagacacaattgacaggatatgaacaggtgcttatttcatttattttggccctaatattatct |
43061301 |
T |
|
| Q |
361 |
cttggtcatgcaagaagcagccaactgttgcaaaatcgtcaactgaagctgaatatcg |
418 |
Q |
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||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
43061300 |
cttggtcatgcaagaagcagccaacagttgcaaaatcatcaactgaagctgaatatcg |
43061243 |
T |
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