View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_high_29 (Length: 433)
Name: NF16638_high_29
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 27 - 419
Target Start/End: Complemental strand, 4776273 - 4775881
Alignment:
| Q |
27 |
ttctgctcacaacctaaacctgactccacatactgtgatagtaaggaatttcgcagtatacttggtgccttacattacctttcaatcacacgcccggaca |
126 |
Q |
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| T |
4776273 |
ttctgctcacaacctaaacccgactccacatactgtgacagtaaggaatttcgcagtatgcttggtgccttacactacctttcaatcactcgcccagaca |
4776174 |
T |
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| Q |
127 |
tagcattcccggtgaataaactagcacaacaaatgcaagctcctactgtgacagatatgcaagccttaaatagagtattgcgctatctcaaatccaccat |
226 |
Q |
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| T |
4776173 |
ttgcatttccagtgaataaactagcataacaaatgcaagctcctactgtgacagatatgcaagccttgaagagagtattgcgctatctcaaatccaccat |
4776074 |
T |
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| Q |
227 |
ctccaatggactccatctcacgagatcttcaaatacaagcctcacaagcttttgtgatgcagattgggctggagacacaattgatcggaaatcgacaggt |
326 |
Q |
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| T |
4776073 |
ctccaatggactccatctcacaagatcttcaaatacaaacctcacaagcttttgtgatgcagattaggcaggagacacaattgacaggaaatcaacaggt |
4775974 |
T |
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| Q |
327 |
gcttatttaatttattttggccctaatattatctcttggtcatgcaagaagcagccaactgttgcaaaatcgtcaactgaagctgaatatcgt |
419 |
Q |
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| T |
4775973 |
gcttatttaatttattttggccctaatattatctcttggtcatgcaagaagcaaccaacaattgcaaaatcgtcaactgaagctgaatatcgt |
4775881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 261 - 418
Target Start/End: Complemental strand, 43061400 - 43061243
Alignment:
| Q |
261 |
acaagcctcacaagcttttgtgatgcagattgggctggagacacaattgatcggaaatcgacaggtgcttatttaatttattttggccctaatattatct |
360 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||||||||||| ||| || |||||||||||||| ||||||||||||||||||||||||| |
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| T |
43061400 |
acaagcctcacaaacttttgtgatgcagattgggcaggagacacaattgacaggatatgaacaggtgcttatttcatttattttggccctaatattatct |
43061301 |
T |
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| Q |
361 |
cttggtcatgcaagaagcagccaactgttgcaaaatcgtcaactgaagctgaatatcg |
418 |
Q |
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| T |
43061300 |
cttggtcatgcaagaagcagccaacagttgcaaaatcatcaactgaagctgaatatcg |
43061243 |
T |
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