View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_high_3 (Length: 685)
Name: NF16638_high_3
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 14 - 545
Target Start/End: Complemental strand, 42344227 - 42343694
Alignment:
| Q |
14 |
atcaaaaggtgcctccaaattacaaactgagggataaagtatgcattgaagatatgtttgttgggtgggagggtaaaatcgccagatcatgatagtggcg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42344227 |
atcaaaaggtgcctccaaattacaaactgagggataaagtatgcattgaagatatgtttgttgggtgggagggtaaaagcgccagatcatgatagtggcg |
42344128 |
T |
|
| Q |
114 |
tgacaaaagtgcaatttatcctatatttagtgtaacgttgaatcaccaattcccgcgtttcgatgcaaatattgccgtgatatttggaagctacaaactt |
213 |
Q |
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||||||||||||||||||| |||| ||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42344127 |
tgacaaaagtgcaatttatactatgtttggtgtagcgttgaatcaccaattcccgcgtttcaatgcaaatattgccgtgatatttggaagctacaaactt |
42344028 |
T |
|
| Q |
214 |
gagcttctctctaaacgtggttttcctgcctcc-accacttcaacaaacacaccattagtataaatgtataagcatgtataagaatcactctaacagcca |
312 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42344027 |
gagcttctctctaaacgtggttttcctgcctcccaccgcttcaacaaacacaccattagtataaatgtataagcatgtataagaatcactctaacagcca |
42343928 |
T |
|
| Q |
313 |
taaagtcttaaccaggtttgcgcccagatattcattacaacgaatgacaaactatatatttagtgttcactattcatcattttcacccttcgcttgatag |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42343927 |
caaagtcttaaccaggtttgcgcccagatattcattacaacgaatgacaaactatatatttagtgttcactattcatcattttcacccttcgcttgatag |
42343828 |
T |
|
| Q |
413 |
acttcaggatctgtccatgcatatgtagcagctcggttgtcattagataatatatgttggtacca-nnnnnnngttttacttgaaaatttaacttgaaac |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
42343827 |
acttcaggatctgtccatgcatatgtagcagctcggttgtcattggataatatatgttggtgccattttttttgttttacttgaaaatttaacttgaaac |
42343728 |
T |
|
| Q |
512 |
aagtaaaataaaaaatccagtcgaacttaaagat |
545 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
42343727 |
aagtaaaataaaaaatccagtcgaacttaaagat |
42343694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 530 - 670
Target Start/End: Complemental strand, 42343622 - 42343482
Alignment:
| Q |
530 |
agtcgaacttaaagatgcttttcattacttatgaacgaattgaaatttaannnnnnngaattaggttcaaatccagcatagatttagagaatacatagta |
629 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42343622 |
agtcgaacttaaagatgcttttcattacttatgaacgaattgaaatttaatttttttgaattaggttcaaatctagcatagatttagagaatacatagta |
42343523 |
T |
|
| Q |
630 |
aggttttggtccgctaacctcattctagcgtatcttttcat |
670 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
42343522 |
aggttttggtccgctaacctcattctagcgtatcttttcat |
42343482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 2e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 134 - 267
Target Start/End: Complemental strand, 32214602 - 32214468
Alignment:
| Q |
134 |
ctatatttagtgtaacgttgaatcaccaattcccgcgtttcgatgcaaatattgccgtgatatttggaagctacaaacttgagcttctctctaaacgtgg |
233 |
Q |
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|||| ||| ||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32214602 |
ctatgtttggtgtagcgttgaatcaccaatttccgcgtttcgatgcaaatattgccatgatatttggaagctacaaacttgagcttctctctaaacgtag |
32214503 |
T |
|
| Q |
234 |
ttttcctgcc-tccaccacttcaacaaacacacca |
267 |
Q |
| |
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||||||| || |||||||||||||||||||||||| |
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| T |
32214502 |
ttttcctaccttccaccacttcaacaaacacacca |
32214468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 4e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 135 - 272
Target Start/End: Original strand, 53813166 - 53813302
Alignment:
| Q |
135 |
tatatttagtgtaacgttgaatcaccaattcccgcgtttcgatgcaaatattgccgtgatatttggaagctacaaacttgagcttctctctaaacgtggt |
234 |
Q |
| |
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||||||| |||| ||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
53813166 |
tatatttgatgtagcgttgaatcaccaattcccgcattttgatgcaaatattgtcgtgatatttggaagttacaaacttgagct--tctctaaacgtggt |
53813263 |
T |
|
| Q |
235 |
tttcctgcct-ccaccacttcaacaaacacaccattagt |
272 |
Q |
| |
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|||||| ||| |||| |||||||||||||||||||||| |
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| T |
53813264 |
tttcctacctcccactgcttcaacaaacacaccattagt |
53813302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 129 - 228
Target Start/End: Original strand, 53416944 - 53417043
Alignment:
| Q |
129 |
ttatcctatatttagtgtaacgttgaatcaccaattcccgcgtttcgatgcaaatattgccgtgatatttggaagctacaaacttgagcttctctctaaa |
228 |
Q |
| |
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|||| |||| ||| ||||| ||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53416944 |
ttatactatgtttggtgtagcgttgaatcaccaattctcgcatttcgatgtaaatattgccgtgatatttggaagctacaaacttgagcttctctctaaa |
53417043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 265
Target Start/End: Original strand, 6844312 - 6844413
Alignment:
| Q |
166 |
ccgcgtttcgatgcaaatattgccgtgatatttggaagctacaaacttgagcttctctctaaacgtggttttcctgcct--ccaccacttcaacaaacac |
263 |
Q |
| |
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|||||||||||||||||| | ||||||||||||||||||| | | | ||||||| ||| ||| |||||||| || || ||||| ||||||||||||| |
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| T |
6844312 |
ccgcgtttcgatgcaaatttgaccgtgatatttggaagctagatattggagcttcactcaaaatgtggttttattggcttcccaccgcttcaacaaacac |
6844411 |
T |
|
| Q |
264 |
ac |
265 |
Q |
| |
|
|| |
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|
| T |
6844412 |
ac |
6844413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 244
Target Start/End: Original strand, 6741185 - 6741286
Alignment:
| Q |
143 |
gtgtaacgttgaatcaccaattcccgcgtttcgatgcaaatattgccgtgatatttggaagctacaaacttgagcttctctctaaacgtggttttcctgc |
242 |
Q |
| |
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||||| |||||| |||| |||||||| ||| |||||| | | |||||||||||||||||||||||| |||||||| | ||||||||||||| ||| |
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| T |
6741185 |
gtgtagcgttgagtcactcattcccgcacttcaatgcaattttagccgtgatatttggaagctacaaatcggagcttctttgcaaacgtggttttcatgc |
6741284 |
T |
|
| Q |
243 |
ct |
244 |
Q |
| |
|
|| |
|
|
| T |
6741285 |
ct |
6741286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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