View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_high_30 (Length: 414)
Name: NF16638_high_30
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 7353197 - 7352797
Alignment:
| Q |
1 |
taaaatactaccacatatctttggacacacatgtttttctaatcacaatcttaccagaataaaaa--tatattaatataagtttacctgaaaatgtgttt |
98 |
Q |
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| T |
7353197 |
taaaatactcccacatatctttggacacatatgtttttctaatcacaattttaccagaaaaaaaaaatatattaatataagtttacctgaaaatgtgttt |
7353098 |
T |
|
| Q |
99 |
cttgtttatgcatcatttcatgaaccaacttcttcataagagtaacttcaaccattaatgattcaagtttgatttctttaccaccaatccctccagcttg |
198 |
Q |
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| T |
7353097 |
cttgtttatgcatcatttcatgaaccaacttcttcataagagttacttcaaccattaatgattcaagtttgatttctttaccaccaatccctccagcttg |
7352998 |
T |
|
| Q |
199 |
attctccatcgtcacaaaacgaccactaatggcatcatcttcatccatgttcatgtttctgcaaacatcatatgtatttattaacaagtaactaatgcat |
298 |
Q |
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| T |
7352997 |
attctccatcgtcacaaaacgaccactaatggcatcatcttcatccatgttcatgtttctgtaaacatcatatgtatttattaacaagtaactaatgcat |
7352898 |
T |
|
| Q |
299 |
gatattttattggtaactctttattacgaataccccttttccataatnnnnnnntatatgttagtataaaacaaactgttacctggcattagttagatca |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||| || ||||||| |
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| T |
7352897 |
gatattttattggtaactctttattacgaataccccttttccataataaaaaaatatctgttagtataaaacaaagtgttacctggcatcagatagatca |
7352798 |
T |
|
| Q |
399 |
t |
399 |
Q |
| |
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| |
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| T |
7352797 |
t |
7352797 |
T |
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