View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_high_34 (Length: 402)
Name: NF16638_high_34
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_high_34 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 19 - 397
Target Start/End: Original strand, 7303206 - 7303585
Alignment:
| Q |
19 |
catattagatcaaaacaaacagaagcaaccatataagataatcaaataaatcagttgtaacatttcaaaagagagtaaacacaaaatcatttataaaagc |
118 |
Q |
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| T |
7303206 |
catattagatcaaaacaaacagaagcaaccatataagataatcaaataaatcagttgtaacatttcaaaagagagtaaacacaaaatcatttataaaagc |
7303305 |
T |
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| Q |
119 |
acccataatggtgggttgagattaatacgtagaaagcttttgacacacttcaatttaccctcctg-tgttgtcaatcacaagcttttgagagacttcaat |
217 |
Q |
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| T |
7303306 |
ccccataatggtgggttgagattaattcgtagaaagcttttgacacacttcaatttaccctccagaggttgccaatcacaagcttttgagagacttcaat |
7303405 |
T |
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| Q |
218 |
ctatcatccagaggttgcatatcaaagttgatcttttccactctctctttgagaatccgaatatcctccaaaacaatatccaaatcagcaagtgatttca |
317 |
Q |
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| T |
7303406 |
ctatcatccagaggttgcatatcaaagttgatcttttccactctctctttgagaatccgaatatcctccaaaacaatatccaaatcagcaagtgatttca |
7303505 |
T |
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| Q |
318 |
tcaagcannnnnnngcttcatcaacttctccttcatcaccagtaattgctactacttcctctttatcttcctttgcttct |
397 |
Q |
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| T |
7303506 |
tcaagcatttttttgcttcatcaacttctccttcatcaccagtaattgctactacttcctctttatcttcctttacttct |
7303585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 7353422 - 7353491
Alignment:
| Q |
34 |
caaacagaagcaaccatataagataatcaaataaatcagttgtaacatttcaaaagagagtaaacacaaaa |
104 |
Q |
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| T |
7353422 |
caaaaagaagcaaccatattagataatcaaataaatcagttgcaacatttc-aaacagagtaaacacaaaa |
7353491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 7336266 - 7336303
Alignment:
| Q |
66 |
aaatcagttgtaacatttcaaaagagagtaaacacaaa |
103 |
Q |
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| T |
7336266 |
aaatcagttgcaacatttcaaaagagagtaaacacaaa |
7336303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 7341815 - 7341874
Alignment:
| Q |
46 |
accatataagataatcaaataaatcagttgtaacatttcaaaagagagtaaacacaaaatca |
107 |
Q |
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| T |
7341815 |
accatataagataatctaat-aattagttgcaacatttcagaagagagt-aacacaaaatca |
7341874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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