View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_high_36 (Length: 374)
Name: NF16638_high_36
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_high_36 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 10366992 - 10367365
Alignment:
| Q |
1 |
tttagtttaattttccatttttatttctagttttcttgcttgtacaccacttttgaataggtactataaataatannnnnnngagaaatgaaagtatata |
100 |
Q |
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| T |
10366992 |
tttagtttaattttccatttttatttctagttttcttgcttgtacaccacttttgaataggtactataaataatatttttttgagaaatgaaagtatata |
10367091 |
T |
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| Q |
101 |
attatgatttctgttgactgatattgatagtttgagtttcaatgtgtcaaaatgtagtgtcatgattcaggaatgccactagagatgggaaagaataaac |
200 |
Q |
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| T |
10367092 |
attatgatttctgttgactgatattgatagtttgagtttcaatgtgtcaaaatgtagtgtcaggattcaggaatgccactagagatgggaaagaataaac |
10367191 |
T |
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| Q |
201 |
aacctacagaatcaagtgttcgtgaccccgaaaaaagagaagaaacctctcttgaatgtttttccccgtttggctttgggatgaaggagtggttttggaa |
300 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||||| ||| || |||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
10367192 |
aacctacggaatcaagtgttcgtgaccctgaaaaaagagaagaaacttctgttaaatgtttttccccgtttggcttcggggtgaaggagtggttttggaa |
10367291 |
T |
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| Q |
301 |
gaggcaacacaacccaaagaaatgtattgaaaaagtgcatgaaatctacactaaggaatgcgttgaagtagagt |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
10367292 |
gaggcaacacaacccaaagaaatgtattgaaaaagtgcatgaaatctacacaaaggaatgcgttgaagtagagt |
10367365 |
T |
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