View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16638_high_38 (Length: 369)

Name: NF16638_high_38
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16638_high_38
NF16638_high_38
[»] chr7 (9 HSPs)
chr7 (1-351)||(443995-444348)
chr7 (1-49)||(24748987-24749036)
chr7 (1-49)||(9681218-9681266)
chr7 (1-49)||(13099316-13099364)
chr7 (1-49)||(44724975-44725023)
chr7 (1-49)||(37411964-37412014)
chr7 (1-39)||(9679457-9679495)
chr7 (1-48)||(31434892-31434940)
chr7 (1-49)||(42223553-42223601)
[»] chr2 (12 HSPs)
chr2 (1-49)||(6263992-6264040)
chr2 (1-49)||(22287180-22287228)
chr2 (1-49)||(21520533-21520581)
chr2 (1-45)||(34979437-34979481)
chr2 (1-49)||(42923292-42923340)
chr2 (1-49)||(42923350-42923398)
chr2 (1-44)||(6258666-6258709)
chr2 (2-49)||(11739420-11739467)
chr2 (1-49)||(3022535-3022583)
chr2 (1-48)||(17849480-17849528)
chr2 (1-48)||(19008003-19008051)
chr2 (1-49)||(22405769-22405817)
[»] chr4 (17 HSPs)
chr4 (1-51)||(5101357-5101407)
chr4 (1-49)||(24446501-24446549)
chr4 (1-49)||(13547596-13547644)
chr4 (1-49)||(16453749-16453797)
chr4 (1-49)||(22802576-22802624)
chr4 (1-48)||(2891733-2891780)
chr4 (1-48)||(6765288-6765335)
chr4 (1-48)||(16455667-16455714)
chr4 (1-48)||(3824447-3824496)
chr4 (89-128)||(46308702-46308743)
chr4 (157-214)||(46303845-46303902)
chr4 (1-41)||(12395697-12395737)
chr4 (1-41)||(12400659-12400699)
chr4 (1-49)||(14789272-14789320)
chr4 (1-49)||(36921337-36921385)
chr4 (1-49)||(38269994-38270041)
chr4 (1-48)||(47563200-47563248)
[»] chr8 (9 HSPs)
chr8 (1-49)||(25952963-25953011)
chr8 (1-49)||(35872300-35872348)
chr8 (1-48)||(183263-183310)
chr8 (4-49)||(14419034-14419079)
chr8 (85-134)||(39323282-39323331)
chr8 (4-51)||(37214106-37214153)
chr8 (1-50)||(14477693-14477742)
chr8 (1-41)||(27106754-27106794)
chr8 (1-49)||(15956396-15956444)
[»] chr1 (21 HSPs)
chr1 (1-49)||(28206911-28206959)
chr1 (3-49)||(41647310-41647356)
chr1 (151-213)||(3804121-3804183)
chr1 (154-214)||(3801763-3801823)
chr1 (1-49)||(16429340-16429388)
chr1 (1-49)||(28998093-28998141)
chr1 (1-49)||(29003809-29003857)
chr1 (1-49)||(38925327-38925375)
chr1 (1-48)||(2949079-2949126)
chr1 (1-48)||(3579431-3579477)
chr1 (1-48)||(13215471-13215518)
chr1 (1-48)||(39932467-39932514)
chr1 (184-214)||(23618451-23618481)
chr1 (184-214)||(23649797-23649827)
chr1 (184-214)||(23735422-23735452)
chr1 (1-50)||(14097813-14097862)
chr1 (1-46)||(25251123-25251168)
chr1 (1-49)||(50078634-50078683)
chr1 (1-49)||(6995539-6995587)
chr1 (1-49)||(18839975-18840023)
chr1 (184-216)||(50668521-50668553)
[»] chr6 (9 HSPs)
chr6 (1-48)||(3629711-3629758)
chr6 (1-49)||(10584365-10584414)
chr6 (1-49)||(3631783-3631831)
chr6 (1-49)||(15367451-15367499)
chr6 (1-48)||(13040185-13040232)
chr6 (1-49)||(3394790-3394838)
chr6 (1-49)||(15346766-15346814)
chr6 (1-48)||(15530003-15530053)
chr6 (1-49)||(24338294-24338342)
[»] chr3 (13 HSPs)
chr3 (1-48)||(24980079-24980126)
chr3 (2-51)||(42992754-42992802)
chr3 (1-49)||(3315053-3315101)
chr3 (1-48)||(15781246-15781293)
chr3 (2-48)||(39715836-39715883)
chr3 (4-48)||(3307131-3307176)
chr3 (1-49)||(29897526-29897575)
chr3 (1-49)||(32219455-32219504)
chr3 (4-48)||(51674608-51674653)
chr3 (1-49)||(18099009-18099057)
chr3 (1-49)||(28412869-28412916)
chr3 (1-49)||(53591550-53591598)
chr3 (1-49)||(53917505-53917553)
[»] scaffold0004 (1 HSPs)
scaffold0004 (1-49)||(80258-80306)
[»] chr5 (17 HSPs)
chr5 (1-49)||(6745460-6745508)
chr5 (1-49)||(18467076-18467124)
chr5 (1-49)||(20505686-20505734)
chr5 (1-48)||(16092045-16092092)
chr5 (1-42)||(21948421-21948462)
chr5 (1-49)||(37705625-37705674)
chr5 (1-49)||(41585579-41585627)
chr5 (1-48)||(2954802-2954849)
chr5 (2-49)||(6747697-6747744)
chr5 (2-48)||(34530559-34530605)
chr5 (77-135)||(8185854-8185914)
chr5 (1-47)||(12555757-12555805)
chr5 (1-46)||(27912928-27912973)
chr5 (1-44)||(17818338-17818382)
chr5 (1-49)||(24127244-24127292)
chr5 (1-49)||(27910825-27910873)
chr5 (1-49)||(36402169-36402217)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-49)||(50410-50458)


Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 443995 - 444348
Alignment:
Q  1 cacacatcaagtttgttattagtg--agttttctcatcgaattcacaacaactgaatttgtctttctatcggtttgcggcttttaataattttgttcttt 98  Q
    |||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  443995 cacacatcaagtttgttattggtgtgagttttctcatcgaattcacaacaactgaatttgtctttctatcggtttgcggcttttaataattttgttcttt 444094  T
Q  99 catattagttgtgctctgttggaatttaaaggaacgttggcagctgaattaatttggtttaacatgcacttcatccatctaattcgatttagattttgac 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  444095 catattagttgtgctctgttggaatttaaaggaacgttggcagctgaattaatttggtttaacatgcacttcatccatctaattcgatttagattttgac 444194  T
Q  199 tttagaaccatgtgaaaaatgcaataagttgcttatgcttatgtttatgttgg-tatttttgccagtcttggtgatttcattcagctggagttttactct 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  444195 tttagaaccatgtgaaaaatgcaataagttgcttatgcttatgtttatgttggttttttttgccagtcttggtgatttcattcagctggagttttactct 444294  T
Q  298 acatttaaaaagttttgtattgttggattttgtttattatgactatgagtatgt 351  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  444295 acatttaaaaagttttgtattgttggattttgtttattatgagtatgagtatgt 444348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 24748987 - 24749036
Alignment:
Q  1 cacacatcaagtttgttattagtgag-ttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| | |||||||||||||||||||||||    
T  24748987 cacacatcaagtttgttattggtgtggttttctcatcgaattcacaacaa 24749036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 9681218 - 9681266
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| |||||||||| |||| ||||||||    
T  9681218 cacacatcaagtttgttattggtgtgttttctcattgaatgcacaacaa 9681266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13099364 - 13099316
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| | ||| ||||||||||||||||||    
T  13099364 cacacatcaagtttgttattggtgtgatttttcatcgaattcacaacaa 13099316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 44724975 - 44725023
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| |||||| |||||||||| ||||||    
T  44724975 cacacatcaagtttgttattggtgtgttttcccatcgaattcgcaacaa 44725023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 37412014 - 37411964
Alignment:
Q  1 cacacatcaagtttgttattagtg--agttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| |||  |||||||||||| ||||||||||||    
T  37412014 cacacatcaagtttgttattggtgtgagttttctcatcaaattcacaacaa 37411964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 9679457 - 9679495
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaa 39  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  9679457 cacacatcaagtttgttattggtgtgttttctcatcgaa 9679495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 31434940 - 31434892
Alignment:
Q  1 cacacatcaagtttgttattagtgag-ttttctcatcgaattcacaaca 48  Q
    |||||||||||||||||||| ||| | |||||||||||||||| |||||    
T  31434940 cacacatcaagtttgttattggtgtgattttctcatcgaattcgcaaca 31434892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 42223553 - 42223601
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| ||||| | ||||||||| ||||||    
T  42223553 cacacatcaagtttgttattggtgtgtttttttatcgaattcgcaacaa 42223601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 6264040 - 6263992
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6264040 cacacatcaagtttgttattagtgtgttttctcatcgaattcacaacaa 6263992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 22287228 - 22287180
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  22287228 cacacatcaagtttgttattggtgtgttttctcatcgaattcacaacaa 22287180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 21520581 - 21520533
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| ||||||||||||||||| ||||||    
T  21520581 cacacatcaagtttgttattggtgtgttttctcatcgaattcgcaacaa 21520533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 34979481 - 34979437
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcaca 45  Q
    |||||||||||||||||||| ||| |||||||||| |||||||||    
T  34979481 cacacatcaagtttgttattggtgtgttttctcattgaattcaca 34979437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 42923340 - 42923292
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| |||||| || ||||||||||||||    
T  42923340 cacacatcaagtttgttattggtgtgttttcacaacgaattcacaacaa 42923292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 42923398 - 42923350
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| |||||| || ||||||||||||||    
T  42923398 cacacatcaagtttgttattggtgtgttttcacaacgaattcacaacaa 42923350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 6258709 - 6258666
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcac 44  Q
    |||||||||||||||||||| ||  |||||||||||||||||||    
T  6258709 cacacatcaagtttgttattggtatgttttctcatcgaattcac 6258666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 11739467 - 11739420
Alignment:
Q  2 acacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    ||||||||||||||||||| ||| | ||| ||||||||||||||||||    
T  11739467 acacatcaagtttgttattggtgtgatttttcatcgaattcacaacaa 11739420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 3022535 - 3022583
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| | | ||||| ||||||||||||||    
T  3022535 cacacatcaagtttgttatttgtgtgatctctcaccgaattcacaacaa 3022583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 17849480 - 17849528
Alignment:
Q  1 cacacatcaagtttgttattagtgag-ttttctcatcgaattcacaaca 48  Q
    |||||||||||||||||||| ||| | |||| |||||||||||||||||    
T  17849480 cacacatcaagtttgttattggtgtgattttttcatcgaattcacaaca 17849528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 19008003 - 19008051
Alignment:
Q  1 cacacatcaagtttgttattagtgag-ttttctcatcgaattcacaaca 48  Q
    |||||||||||||||||||| ||| | |||| |||||||||||||||||    
T  19008003 cacacatcaagtttgttattggtgtgattttttcatcgaattcacaaca 19008051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 22405817 - 22405769
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    ||||||||||||||||||||  || |||||||| | |||||||||||||    
T  22405817 cacacatcaagtttgttattgatgtgttttctcgttgaattcacaacaa 22405769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 5101357 - 5101407
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaact 51  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  5101357 cacacatcaagtttgttattggtgtgttttctcatcgaattcacaacaact 5101407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 24446549 - 24446501
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  24446549 cacacatcaagtttgttattggtgtgttttctcatcgaattcacaacaa 24446501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 13547596 - 13547644
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| |||||||||| |||| ||||||||    
T  13547596 cacacatcaagtttgttattggtgtgttttctcattgaatgcacaacaa 13547644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 16453749 - 16453797
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| | ||| ||||||||||||||||||    
T  16453749 cacacatcaagtttgttattggtgtgatttttcatcgaattcacaacaa 16453797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 22802624 - 22802576
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| | ||| ||||||||||||||||||    
T  22802624 cacacatcaagtttgttattggtgtgatttttcatcgaattcacaacaa 22802576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 2891733 - 2891780
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaaca 48  Q
    |||||||||||||||||||| ||| | ||| |||||||||||||||||    
T  2891733 cacacatcaagtttgttattggtgtgatttttcatcgaattcacaaca 2891780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 6765288 - 6765335
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaaca 48  Q
    |||||||||||||||||||| ||| | ||| |||||||||||||||||    
T  6765288 cacacatcaagtttgttattggtgtgatttttcatcgaattcacaaca 6765335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 16455667 - 16455714
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaaca 48  Q
    |||||||||||||||||||| ||| | ||| |||||||||||||||||    
T  16455667 cacacatcaagtttgttattggtgtgatttttcatcgaattcacaaca 16455714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 3824496 - 3824447
Alignment:
Q  1 cacacatcaagtttgttattagtgag--ttttctcatcgaattcacaaca 48  Q
    |||||||||||||||||||| ||| |  ||||||||||||||||||||||    
T  3824496 cacacatcaagtttgttattggtgtgatttttctcatcgaattcacaaca 3824447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 46308743 - 46308702
Alignment:
Q  89 tttgttctttcatattagttgtg--ctctgttggaatttaaa 128  Q
    |||||||||||||||||||||||  |||||||||||||||||    
T  46308743 tttgttctttcatattagttgtggtctctgttggaatttaaa 46308702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 46303902 - 46303845
Alignment:
Q  157 ttaacatgcacttcatccatctaattcgatttagattttgactttagaaccatgtgaa 214  Q
    |||||||||| |||||||||||  |  ||||||||||||||||||| ||| |||||||    
T  46303902 ttaacatgcatttcatccatctgttatgatttagattttgactttaaaactatgtgaa 46303845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 12395737 - 12395697
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaatt 41  Q
    |||||||||||||||||||| ||| |||||||||| |||||    
T  12395737 cacacatcaagtttgttattggtgtgttttctcattgaatt 12395697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 12400699 - 12400659
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaatt 41  Q
    |||||||||||||||||||| ||| |||||||||| |||||    
T  12400699 cacacatcaagtttgttattggtgtgttttctcattgaatt 12400659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 14789320 - 14789272
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| | ||| ||||||||||| ||||||    
T  14789320 cacacatcaagtttgttattggtgtgatttttcatcgaattcgcaacaa 14789272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 36921385 - 36921337
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| | ||| ||||||||||| ||||||    
T  36921385 cacacatcaagtttgttattggtgtgatttttcatcgaattcgcaacaa 36921337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 38270041 - 38269994
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| ||||||| ||||||||| ||||||    
T  38270041 cacacatcaagtttgttattggtgtgttttct-atcgaattcccaacaa 38269994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 47563200 - 47563248
Alignment:
Q  1 cacacatcaagtttgttattagtg-agttttctcatcgaattcacaaca 48  Q
    |||||||||||||||||||| |||  ||||||||||| |||||||||||    
T  47563200 cacacatcaagtttgttattggtgtggttttctcatcaaattcacaaca 47563248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 25952963 - 25953011
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  25952963 cacacatcaagtttgttattggtgtgttttctcatcgaattcacaacaa 25953011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 35872348 - 35872300
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  35872348 cacacatcaagtttgttattggtgtgttttctcatcgaattcacaacaa 35872300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 183263 - 183310
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaaca 48  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||    
T  183263 cacacatcaagtttgttattggtgtgttttctcatcgaattcacaaca 183310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 14419079 - 14419034
Alignment:
Q  4 acatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||    
T  14419079 acatcaagtttgttattggtgtgttttctcatcgaattcacaacaa 14419034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 39323282 - 39323331
Alignment:
Q  85 taattttgttctttcatattagttgtgctctgttggaatttaaaggaacg 134  Q
    |||| ||||||||||||||||||||||||| | |||||||||||||||||    
T  39323282 taatcttgttctttcatattagttgtgctccgatggaatttaaaggaacg 39323331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 37214153 - 37214106
Alignment:
Q  4 acatcaagtttgttattagtgagttttctcatcgaattcacaacaact 51  Q
    ||||||||||||||||| ||| ||||||||||| ||||||||||||||    
T  37214153 acatcaagtttgttattggtgtgttttctcatcaaattcacaacaact 37214106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 14477693 - 14477742
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaac 50  Q
    |||||||||||||||||||| ||| | ||| |||||||||||||||||||    
T  14477693 cacacatcaagtttgttattggtgtgatttttcatcgaattcacaacaac 14477742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 27106794 - 27106754
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaatt 41  Q
    |||||||||||||||||||| ||| ||||||||||||||||    
T  27106794 cacacatcaagtttgttattggtgtgttttctcatcgaatt 27106754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 15956396 - 15956444
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    ||||||||||||||||||||  || | ||| ||||||||||||||||||    
T  15956396 cacacatcaagtttgttattgatgtgatttttcatcgaattcacaacaa 15956444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 28206959 - 28206911
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  28206959 cacacatcaagtttgttattggtgtgttttctcatcgaattcacaacaa 28206911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 41647310 - 41647356
Alignment:
Q  3 cacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||    
T  41647310 cacatcaagtttgttattggtgtgttttctcatcgaattcacaacaa 41647356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 3804183 - 3804121
Alignment:
Q  151 tttggtttaacatgcacttcatccatctaattcgatttagattttgactttagaaccatgtga 213  Q
    ||||| ||||||||||||||||||||||  |  |||||| |||||||||||| ||||||||||    
T  3804183 tttgggttaacatgcacttcatccatctgttatgatttaaattttgactttaaaaccatgtga 3804121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 3801823 - 3801763
Alignment:
Q  154 ggtttaacatgcacttcatccatctaattcgatttagattttgactttagaaccatgtgaa 214  Q
    |||| |||||||| |||||||||||  |  ||||||||||||||||||| |||||||||||    
T  3801823 ggttaaacatgcatttcatccatctgttatgatttagattttgactttaaaaccatgtgaa 3801763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 16429340 - 16429388
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| | ||| ||||||||||||||||||    
T  16429340 cacacatcaagtttgttattggtgtgatttttcatcgaattcacaacaa 16429388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 28998141 - 28998093
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||| ||| ||| |||||||| |||||||||||||||    
T  28998141 cacacatcaagtttgtcattggtgtgttttctcttcgaattcacaacaa 28998093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29003857 - 29003809
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||| ||| ||| |||||||| |||||||||||||||    
T  29003857 cacacatcaagtttgtcattggtgtgttttctcttcgaattcacaacaa 29003809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 38925375 - 38925327
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||| ||||| ||| ||||||||||| ||||||||||||    
T  38925375 cacacatcaagtttattattggtgtgttttctcatcaaattcacaacaa 38925327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 2949126 - 2949079
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaaca 48  Q
    |||||||||||||||||||| ||| | ||| |||||||||||||||||    
T  2949126 cacacatcaagtttgttattggtgtgatttttcatcgaattcacaaca 2949079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 3579477 - 3579431
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaaca 48  Q
    |||||||||||||||||||| ||| ||||| |||||||||||||||||    
T  3579477 cacacatcaagtttgttattggtgtgtttt-tcatcgaattcacaaca 3579431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 13215471 - 13215518
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaaca 48  Q
    |||||||||||||| ||||| ||| ||||||||| |||||||||||||    
T  13215471 cacacatcaagtttattattggtgtgttttctcaacgaattcacaaca 13215518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 39932467 - 39932514
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaaca 48  Q
    |||||||||||||||||||| ||| | ||| |||||||||||||||||    
T  39932467 cacacatcaagtttgttattggtgtgatttttcatcgaattcacaaca 39932514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 214
Target Start/End: Complemental strand, 23618481 - 23618451
Alignment:
Q  184 gatttagattttgactttagaaccatgtgaa 214  Q
    |||||||||||||||||||||||||||||||    
T  23618481 gatttagattttgactttagaaccatgtgaa 23618451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 214
Target Start/End: Complemental strand, 23649827 - 23649797
Alignment:
Q  184 gatttagattttgactttagaaccatgtgaa 214  Q
    |||||||||||||||||||||||||||||||    
T  23649827 gatttagattttgactttagaaccatgtgaa 23649797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 214
Target Start/End: Complemental strand, 23735452 - 23735422
Alignment:
Q  184 gatttagattttgactttagaaccatgtgaa 214  Q
    |||||||||||||||||||||||||||||||    
T  23735452 gatttagattttgactttagaaccatgtgaa 23735422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 14097862 - 14097813
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaac 50  Q
    |||||||||||||||||||| ||| ||||| || |||||||| |||||||    
T  14097862 cacacatcaagtttgttattggtgtgttttttcttcgaattcgcaacaac 14097813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 25251168 - 25251123
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaa 46  Q
    |||||||||||||||||||| ||| | ||| |||||||||||||||    
T  25251168 cacacatcaagtttgttattggtgtgatttttcatcgaattcacaa 25251123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 50078683 - 50078634
Alignment:
Q  1 cacacatcaagtttgttattagtgag-ttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| | |||||||||||||||| ||||||    
T  50078683 cacacatcaagtttgttattggtgtgattttctcatcgaattcgcaacaa 50078634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 6995587 - 6995539
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| | ||| ||||||||||| ||||||    
T  6995587 cacacatcaagtttgttattggtgtgatttttcatcgaattcgcaacaa 6995539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 18839975 - 18840023
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| | ||| ||||||||||| ||||||    
T  18839975 cacacatcaagtttgttattggtgtgatttttcatcgaattcgcaacaa 18840023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 50668521 - 50668553
Alignment:
Q  184 gatttagattttgactttagaaccatgtgaaaa 216  Q
    |||||||||||||||||||||| ||||||||||    
T  50668521 gatttagattttgactttagaagcatgtgaaaa 50668553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 3629758 - 3629711
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaaca 48  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||    
T  3629758 cacacatcaagtttgttattggtgtgttttctcatcgaattcacaaca 3629711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10584365 - 10584414
Alignment:
Q  1 cacacatcaagtttgttattagtgag-ttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| | |||||||||||||||||||||||    
T  10584365 cacacatcaagtttgttattggtgtggttttctcatcgaattcacaacaa 10584414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3631831 - 3631783
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    ||||| |||||||||||||| ||| ||||| ||||||||||||||||||    
T  3631831 cacacgtcaagtttgttattggtgtgttttttcatcgaattcacaacaa 3631783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 15367451 - 15367499
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| | ||| ||||||||||||||||||    
T  15367451 cacacatcaagtttgttattggtgtgatttttcatcgaattcacaacaa 15367499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 13040185 - 13040232
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaaca 48  Q
    |||||||||||||||||||||||| | ||| ||||||||||| |||||    
T  13040185 cacacatcaagtttgttattagtgtgatttttcatcgaattcgcaaca 13040232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 3394790 - 3394838
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    ||||||||||| || ||||| ||| ||||||||||||||||| ||||||    
T  3394790 cacacatcaagatttttattggtgtgttttctcatcgaattcgcaacaa 3394838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 15346766 - 15346814
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| | ||| |||||||||| |||||||    
T  15346766 cacacatcaagtttgttattggtgtgatttttcatcgaatttacaacaa 15346814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 15530053 - 15530003
Alignment:
Q  1 cacacatcaagtttgttattagtgag---ttttctcatcgaattcacaaca 48  Q
    |||||||||||||||||||| ||| |   ||||||||||||||||||||||    
T  15530053 cacacatcaagtttgttattggtgtgagtttttctcatcgaattcacaaca 15530003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 24338342 - 24338294
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    ||||||||||||||||||||  || | ||| ||||||||||||||||||    
T  24338342 cacacatcaagtttgttattgatgtgatttttcatcgaattcacaacaa 24338294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 24980079 - 24980126
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaaca 48  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||    
T  24980079 cacacatcaagtttgttattggtgtgttttctcatcgaattcacaaca 24980126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 42992754 - 42992802
Alignment:
Q  2 acacatcaagtttgttattagtgagttttctcatcgaattcacaacaact 51  Q
    ||||||||||||||||||||||| | ||| ||||||||||||||||||||    
T  42992754 acacatcaagtttgttattagtgtgattt-tcatcgaattcacaacaact 42992802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 3315053 - 3315101
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||| ||||| ||| ||||||||||||||||| ||||||    
T  3315053 cacacatcaagtttattattggtgtgttttctcatcgaattcgcaacaa 3315101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 15781246 - 15781293
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaaca 48  Q
    |||||||||||||||||||| ||| |||||  ||||||||||||||||    
T  15781246 cacacatcaagtttgttattggtgtgtttttccatcgaattcacaaca 15781293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 39715836 - 39715883
Alignment:
Q  2 acacatcaagtttgttattagtgag-ttttctcatcgaattcacaaca 48  Q
    ||||||||||||||||||| ||| | ||||||||||||||||||||||    
T  39715836 acacatcaagtttgttattggtgcggttttctcatcgaattcacaaca 39715883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 3307131 - 3307176
Alignment:
Q  4 acatcaagttt-gttattagtgagttttctcatcgaattcacaaca 48  Q
    ||||||||||| |||||| ||| |||||||||||||||||||||||    
T  3307131 acatcaagttttgttattggtgtgttttctcatcgaattcacaaca 3307176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29897575 - 29897526
Alignment:
Q  1 cacacatcaagtttgttattagtgag-ttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| | |||||||| ||||||||||||||    
T  29897575 cacacatcaagtttgttattggtgtggttttctcaacgaattcacaacaa 29897526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32219455 - 32219504
Alignment:
Q  1 cacacatcaagtttgttattagtgag-ttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| | |||| ||||||||||||||||||    
T  32219455 cacacatcaagtttgttatttgtgtgattttttcatcgaattcacaacaa 32219504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 51674653 - 51674608
Alignment:
Q  4 acatcaagtttgttattagtgag-ttttctcatcgaattcacaaca 48  Q
    ||||||||||||||||| ||| | ||||||||||||||||||||||    
T  51674653 acatcaagtttgttattggtgtgattttctcatcgaattcacaaca 51674608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 18099057 - 18099009
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| | ||| ||||||||||| ||||||    
T  18099057 cacacatcaagtttgttattggtgtgatttttcatcgaattcccaacaa 18099009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 28412916 - 28412869
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    ||||||||||||| |||||| ||| ||||| ||||||||||||||||||    
T  28412916 cacacatcaagtt-gttattggtgtgttttttcatcgaattcacaacaa 28412869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 53591550 - 53591598
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||| |||||||||  || |||||||||| |||||||||||||    
T  53591550 cacacatcaaatttgttattgatgtgttttctcattgaattcacaacaa 53591598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 53917553 - 53917505
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||||||| | ||| ||||||| ||| ||||||    
T  53917553 cacacatcaagtttgttattagtgtgatttttcatcgatttcgcaacaa 53917505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 80258 - 80306
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| ||||||||||||||||| ||||||    
T  80258 cacacatcaagtttgttattggtgtgttttctcatcgaattcgcaacaa 80306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 6745460 - 6745508
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| ||||||||||||||||| ||||||    
T  6745460 cacacatcaagtttgttattggtgtgttttctcatcgaattcgcaacaa 6745508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 18467076 - 18467124
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||||||| | ||| ||||||||||||||||||    
T  18467076 cacacatcaagtttgttattagtgtgatttttcatcgaattcacaacaa 18467124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 20505734 - 20505686
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| |||||||||| |||||||||||||    
T  20505734 cacacatcaagtttgttattggtgtgttttctcattgaattcacaacaa 20505686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 16092092 - 16092045
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaaca 48  Q
    |||| ||||||||||||||| ||| |||||||||||||||||||||||    
T  16092092 cacatatcaagtttgttattggtgcgttttctcatcgaattcacaaca 16092045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 21948421 - 21948462
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattc 42  Q
    |||||||||||||||||||| ||| |||||||||||||||||    
T  21948421 cacacatcaagtttgttattggtgtgttttctcatcgaattc 21948462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 37705674 - 37705625
Alignment:
Q  1 cacacatcaagtttgttattagtgag-ttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| | |||||||||||||||||||||||    
T  37705674 cacacatcaagtttgttattggtgtggttttctcatcgaattcacaacaa 37705625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 41585627 - 41585579
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| | ||| ||||||||||||||||||    
T  41585627 cacacatcaagtttgttattggtgtgatttttcatcgaattcacaacaa 41585579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 2954802 - 2954849
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaaca 48  Q
    |||||||||| ||||||||| ||| |||||||||||||||||| ||||    
T  2954802 cacacatcaaatttgttattggtgtgttttctcatcgaattcagaaca 2954849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 6747697 - 6747744
Alignment:
Q  2 acacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    ||||||||||||||||||| ||| ||||||||||| ||||| ||||||    
T  6747697 acacatcaagtttgttattggtgtgttttctcatccaattcgcaacaa 6747744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 34530605 - 34530559
Alignment:
Q  2 acacatcaagtttgttattagtgagttttctcatcgaattcacaaca 48  Q
    ||||||||||||||||||| ||| | ||| |||||||||||||||||    
T  34530605 acacatcaagtttgttattggtgtgatttttcatcgaattcacaaca 34530559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 8185854 - 8185914
Alignment:
Q  77 gcttttaataattttgttctttcatattagttgtgct--ctgttggaatttaaaggaacgt 135  Q
    |||||||| |||||||||||| ||||| |||| | ||  ||||||||||||||||||||||    
T  8185854 gcttttaacaattttgttcttccatatcagttcttctatctgttggaatttaaaggaacgt 8185914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 12555805 - 12555757
Alignment:
Q  1 cacacatcaagtttgttattagtg--agttttctcatcgaattcacaac 47  Q
    |||||||||| ||||||||| |||  |||||||||||||||||||||||    
T  12555805 cacacatcaaatttgttattggtgtgagttttctcatcgaattcacaac 12555757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 27912928 - 27912973
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaa 46  Q
    |||||||||||||||||||| ||| | ||| |||||||||||||||    
T  27912928 cacacatcaagtttgttattggtgggatttttcatcgaattcacaa 27912973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 17818382 - 17818338
Alignment:
Q  1 cacacatcaagtttgttattagtg-agttttctcatcgaattcac 44  Q
    |||||||||||||||||||| |||  |||||||||||||||||||    
T  17818382 cacacatcaagtttgttattggtgtggttttctcatcgaattcac 17818338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 24127244 - 24127292
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    ||||||| |||||||||||| ||| | ||| ||||||||||||||||||    
T  24127244 cacacattaagtttgttatttgtgtgatttttcatcgaattcacaacaa 24127292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27910825 - 27910873
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||| ||||||||| ||| | ||| ||||||||||||||||||    
T  27910825 cacacatcaaatttgttattggtgtgatttttcatcgaattcacaacaa 27910873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 36402217 - 36402169
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| | ||| ||||||||||| ||||||    
T  36402217 cacacatcaagtttgttattggtgtgatttttcatcgaattcgcaacaa 36402169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 50410 - 50458
Alignment:
Q  1 cacacatcaagtttgttattagtgagttttctcatcgaattcacaacaa 49  Q
    |||||||||||||||||||| ||| | ||| ||||||||||| ||||||    
T  50410 cacacatcaagtttgttattggtgtgatttttcatcgaattcgcaacaa 50458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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