View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_high_39 (Length: 367)
Name: NF16638_high_39
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_high_39 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 91 - 360
Target Start/End: Complemental strand, 7361635 - 7361366
Alignment:
| Q |
91 |
gaggctgaagttcctgttaatatgcnnnnnnnnactatgttcactcattttatattttagtgagtgtgattgaattgatgagtagtctggtttgttttta |
190 |
Q |
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| T |
7361635 |
gaggctgaagttcctgtcaatatacttttctttactattttcattcattttatattttagtttgtgtgattaaattgatgagtagtgtggtttgttttta |
7361536 |
T |
|
| Q |
191 |
tcttcggcggataatgatgtcgatgcaatgttgatggtcaccttgctgacttagaaaacctcaactatgatcacttggatagtgtatatgttgatattat |
290 |
Q |
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| T |
7361535 |
tcttcggcggataatgatgtcgatgcaatgttgatggtcaccttgctgacttaggaaacctcaactatgatcacttggatagtgtatatgttgatattat |
7361436 |
T |
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| Q |
291 |
gcaggttggtttgtttgttaggcttgttgtaactgtcaatgttgttaactctggagcaccgacacctttg |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7361435 |
gcaggttggtttgtttgttaggcttgttgtaactgtcaatgttgttaactctggagcaccgacacctttg |
7361366 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 275
Target Start/End: Complemental strand, 13859775 - 13859718
Alignment:
| Q |
218 |
atgttgatggtcaccttgctgacttagaaaacctcaactatgatcacttggatagtgt |
275 |
Q |
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| T |
13859775 |
atgttgatggtgatcttgctgacttagaaaaccttaattacgatgatttggatagtgt |
13859718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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