View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16638_high_42 (Length: 356)
Name: NF16638_high_42
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_high_42 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 113; Significance: 4e-57; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 30 - 176
Target Start/End: Complemental strand, 27844956 - 27844811
Alignment:
| Q |
30 |
ggtttcaagtaccctttatacctctttaatnnnnnnncttgcttcttattaaaaagaagtatatacattatgtgtcctagtcttacataagattcaagct |
129 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27844956 |
ggtttcaagtacccgttatacctctttaataaaaaa-cttgcttcttattaaaaagaaatatatacattatgtgtcctagtcttacataagattcaagct |
27844858 |
T |
|
| Q |
130 |
aaacactatgattattagaggtatatatttctaagacacttaaaaag |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27844857 |
aaacactatgattattagaggtatatatttctaagacacttaaaaag |
27844811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 251 - 341
Target Start/End: Complemental strand, 27844735 - 27844650
Alignment:
| Q |
251 |
atggattaattattagaggtggaaattgagttcatcgatccaatcatttattgatctaatccatcaaatttgaaaaataaataatgaattt |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||| | || |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27844735 |
atggattaattattagaggtggaaattgagttca---at--aatcgatcatcgatccaatccatcaaatttgaaaaataaataatgaattt |
27844650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27846064 - 27846027
Alignment:
| Q |
1 |
aggtgtatgtatgtattactgttctaatgggtttcaag |
38 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
27846064 |
aggtgtatgtatgtattattgttctaatgcgtttcaag |
27846027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University