View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16638_high_43 (Length: 346)
Name: NF16638_high_43
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_high_43 |
 | |
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| [»] scaffold0479 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 338
Target Start/End: Original strand, 33814557 - 33814882
Alignment:
| Q |
13 |
catcaagaagatatttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagataaccaataaggaaaaatg |
112 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
33814557 |
catcaaaaagatacttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagacaaccaataaggaaaaatg |
33814656 |
T |
|
| Q |
113 |
gttgcaatccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgg |
212 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
33814657 |
gttacaatccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaagagggcattgaaaaataaatgg |
33814756 |
T |
|
| Q |
213 |
gtgttcaaactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33814757 |
gtgttcaaactcaagtctgaagagaacaacccaaaccccaagtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaag |
33814856 |
T |
|
| Q |
313 |
aaatattctcaccagtggtgatgatg |
338 |
Q |
| |
|
||||||||||||| ||||||| |||| |
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|
| T |
33814857 |
aaatattctcaccggtggtgaagatg |
33814882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 201 - 338
Target Start/End: Original strand, 33809826 - 33809964
Alignment:
| Q |
201 |
aaaaataaatgggtgttcaaact-caagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtg-ccatcaaaagaaagg |
298 |
Q |
| |
|
|||||||||||||| |||||||| ||| | | ||| || |||||||| ||||| |||||||||| |||||| |||||||||||| || |||||||||||| |
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| T |
33809826 |
aaaaataaatgggttttcaaacttcaattttaaaggga-caacccaacccccaagtacaaagcatgaattggtgtgaaggggtgcccttcaaaagaaagg |
33809924 |
T |
|
| Q |
299 |
cattgattttgaagaaatattctcaccagtggtgatgatg |
338 |
Q |
| |
|
||||||||||||| |||| || || || ||||||| |||| |
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|
| T |
33809925 |
cattgattttgaaaaaatgttttccccggtggtgaagatg |
33809964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 13 - 338
Target Start/End: Original strand, 657 - 982
Alignment:
| Q |
13 |
catcaagaagatatttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagataaccaataaggaaaaatg |
112 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||| ||||||| ||||||||| |||||||| |
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|
| T |
657 |
catcaagaagatacttctcaggtgaatatgtaaacttcacaaaggaaggcgaacctcaaagcttcatggaagccatagagacaaccaataaagaaaaatg |
756 |
T |
|
| Q |
113 |
gttgcaatccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgg |
212 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
757 |
gttgcaatccatggaagaagagatgcaatccctaaaggagaatgaaacgtatgacctggtaaaattaccagatggaaagagggcattgaaaaataaatgg |
856 |
T |
|
| Q |
213 |
gtgttcaaactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaag |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
857 |
gtgttcaaactcaagtctgaagagaacaacccaaatcccagatacaaagcacgaatagtcgtgaaggggtgccatcaaaagaaaggcattgattttgaag |
956 |
T |
|
| Q |
313 |
aaatattctcaccagtggtgatgatg |
338 |
Q |
| |
|
||||||||||||| ||||||| |||| |
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|
| T |
957 |
aaatattctcaccggtggtgaagatg |
982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 323
Target Start/End: Complemental strand, 9754594 - 9754284
Alignment:
| Q |
13 |
catcaagaagatatttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagataaccaataaggaaaaatg |
112 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||| |
|
|
| T |
9754594 |
catcaagaagatacttctcaggtgaatatgtaaacttcactgaggaaggggaacctcaaagcttcatggaagccatagagacaaccaataaagaaaaatg |
9754495 |
T |
|
| Q |
113 |
gttgcaatccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgg |
212 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||| |
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|
| T |
9754494 |
gttgtaatccatggaagaagagatgcaatccctaaaggagaatgagacgtatgacctggtaaaattgccaaatggaaagagggcattgaaaaataaatgg |
9754395 |
T |
|
| Q |
213 |
gtgttcaaactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaag |
312 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9754394 |
gtgttcaaacttaagtctgaagagaacaacccaaatcccagatacaaagcacgaatagtcgtgaaggggtgccatcaaaagaaaggcattgattttgaag |
9754295 |
T |
|
| Q |
313 |
aaatattctca |
323 |
Q |
| |
|
||||||||||| |
|
|
| T |
9754294 |
aaatattctca |
9754284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 338
Target Start/End: Complemental strand, 54969490 - 54969165
Alignment:
| Q |
13 |
catcaagaagatatttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagataaccaataaggaaaaatg |
112 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||| ||||||||| |||||||| |
|
|
| T |
54969490 |
catcaagaagatacttctcaggtgaatatgtaaacttcaccgaggaaggcgaacctcaaagcttcatggaagccatagagacaaccaataaagaaaaatg |
54969391 |
T |
|
| Q |
113 |
gttgcaatccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgg |
212 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
54969390 |
gttgcaatccatggaagaagagatgcaatccctaaaggagaatgacacgtatgacctggtcaaattaccagatggaaagagggcattgaaaaataaatgg |
54969291 |
T |
|
| Q |
213 |
gtgttcaaactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaag |
312 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||| || ||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
54969290 |
gtgtttaaactcaagtctgaagagaacaacccaaatcccagatacaaggcacgaatagtcgtgaaggggtgccatcaaaagaaagacgttgattttgaag |
54969191 |
T |
|
| Q |
313 |
aaatattctcaccagtggtgatgatg |
338 |
Q |
| |
|
||||||||||||| ||||||| |||| |
|
|
| T |
54969190 |
aaatattctcaccggtggtgaagatg |
54969165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 43 - 338
Target Start/End: Complemental strand, 4284273 - 4283981
Alignment:
| Q |
43 |
taaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagataaccaataaggaaaaatggttgcaatccatggaagaagagatgaaatc |
142 |
Q |
| |
|
||||||| ||| | ||| |||||||||||||| |||||||||| ||||||| |||||||||| |||||||| |||||| ||| ||||||| ||| ||| |
|
|
| T |
4284273 |
taaattttactaatgaaagggaacctcaaagcatcatggaagccatagagacaaccaataagcaaaaatggctgcaatgcattcaagaagaaatgccatc |
4284174 |
T |
|
| Q |
143 |
cctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgggtgttcaaactcaagtctgaagagaacaac |
242 |
Q |
| |
|
|||||||||||| | || |||||| |||||||||||| ||||||| |||||||||||||||||| |||||||||| |||| ||||||| |||||||| |
|
|
| T |
4284173 |
cctaaaggagaaccaaacatatgacttggtaaaattactgaatggaaatagggcattgaaaaataaacgggtgttcaagctcatgtctgaatagaacaac |
4284074 |
T |
|
| Q |
243 |
ccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaagaaatattctcaccagtggtgatgatg |
338 |
Q |
| |
|
||||||| ||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||| |
|
|
| T |
4284073 |
tcaaaccctaggtacaaagcacga---gtcgtgaaggaatgccatcaaaagaaaggcattgattttgaagaaaaattctcaccagtgatgaagatg |
4283981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 13563767 - 13563709
Alignment:
| Q |
13 |
catcaagaagatatttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaa |
71 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||| ||||||| ||||||||| |
|
|
| T |
13563767 |
catcaagaagatacttctcaggtgaatatgtaaacttcactaaggaaggcgaacctcaa |
13563709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 133 - 338
Target Start/End: Complemental strand, 4837704 - 4837499
Alignment:
| Q |
133 |
agatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgggtgttcaaactcaagtctga |
232 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||||||||| |
|
|
| T |
4837704 |
agatgcaatccctaaaggagaatgagacgtatgatctggtaaaattaccagatggaaagagggcgttgaaaaacaagtgggtgttcaaactcaagtctga |
4837605 |
T |
|
| Q |
233 |
agagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaagaaatattctcaccagtggtg |
332 |
Q |
| |
|
||||||||||||||| |||| |||||||||| ||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4837604 |
agagaacaacccaaatcccatatacaaagcacaaatagtcgtgaaggggtgccatcgaaagaaaggcattgattttgaagaaatattctcaccagtggtg |
4837505 |
T |
|
| Q |
333 |
atgatg |
338 |
Q |
| |
|
| |||| |
|
|
| T |
4837504 |
aggatg |
4837499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 4837794 - 4837703
Alignment:
| Q |
13 |
catcaagaagatatttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagataaccaataag |
104 |
Q |
| |
|
|||||| |||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
4837794 |
catcaaaaagatacttctcagttgaatatgtaaacttcactgaggaaggggaacctcaaagcttcatggaagccatagagacaaccaataag |
4837703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 196 - 332
Target Start/End: Complemental strand, 1130219 - 1130083
Alignment:
| Q |
196 |
cattgaaaaataaatgggtgttcaaactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaa |
295 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||| | |||||| |||||||||| || |
|
|
| T |
1130219 |
cattgaaaaataattggatgttcaaactcaagtctgaagagaacaagttgaaccccgggtacaaagcacgaattgtcgctaaggggcgccatcaaaataa |
1130120 |
T |
|
| Q |
296 |
aggcattgattttgaagaaatattctcaccagtggtg |
332 |
Q |
| |
|
||||| |||||||||||||||||||||| | |||||| |
|
|
| T |
1130119 |
aggcaatgattttgaagaaatattctcatcggtggtg |
1130083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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