View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16638_high_44 (Length: 345)
Name: NF16638_high_44
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_high_44 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 17 - 332
Target Start/End: Complemental strand, 11913514 - 11913196
Alignment:
| Q |
17 |
agtctcaaacagaaataagaaattcataggaactatttgtgtcatttcccttgtttgcaatatttaattgcatggtgaactacttataatctcttaattg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
11913514 |
agtctcaaacagaaataagaaattcataggaactatttgtgtcatttcccttgtttgcaatatt-aattgcatggtgaactacttataatctcttaattg |
11913416 |
T |
|
| Q |
117 |
aattttcattatggttgttgtaatacattttgaaataaattgacaagaatttgtttgataaaacaaactccttccattcaagcaacaacgtaa----tgt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
11913415 |
cattttcattatggttgttgtaatacattttgaaataaattgacaagaatttgtttgatcaaacaaactccttccattcaagcaacaacgtaaattgtgt |
11913316 |
T |
|
| Q |
213 |
cttgattttctgttaatttagtcatatacaaggccaacttatattggttctttatggttgtttgtgttcgtttcattttgagaaatcaattttgtctacg |
312 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11913315 |
cttgattttctgttcatttaatcatatacaaggccaacttatattggttctttatggttgtttgtgttcgtttcattttgagaaatcaattttgcctacg |
11913216 |
T |
|
| Q |
313 |
cgcatatcttacagaataat |
332 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
11913215 |
tgcatatcttacagaataat |
11913196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University