View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16638_high_46 (Length: 336)
Name: NF16638_high_46
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_high_46 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 39940780 - 39941085
Alignment:
| Q |
19 |
attaacaatcgcaaaacaaaaaccaaacactca-acacaaccacactcttcactcatcttcatcgtaacatggcttcagaacctcatcgacgtgacgtcg |
117 |
Q |
| |
|
|||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
39940780 |
attaacaatcgcaaaatcaaaaccaaacactctgatacaaccacactcttcactcatcttcatcgtaacatggctccagaacctcatcgacgtgacgtcg |
39940879 |
T |
|
| Q |
118 |
aaacctccgatgaacaacttgatgagatttccgttgaaaaggggtttgaaggaaaatctgttccttcgtggcagaaacaggttacggttagggcaatagt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
39940880 |
aaacctccgatgaacaacttgatgagatttccattgaaaaagggtttgaaggaaaatctgttccttcgtggcagaaacaggttactgttagggcaatagt |
39940979 |
T |
|
| Q |
218 |
agtgagtatcatgttatcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattccctctttgaatgtttcggctgggttgtta |
317 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39940980 |
cgtgagtatcatgctatcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattccctctttgaatgtttcggctgggttgtta |
39941079 |
T |
|
| Q |
318 |
gggttc |
323 |
Q |
| |
|
|||||| |
|
|
| T |
39941080 |
gggttc |
39941085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 39956459 - 39956731
Alignment:
| Q |
19 |
attaacaatcgcaaaacaaaaaccaaacactcaacacaaccacactcttcactcat---cttcatcgtaacatggcttcagaacctcatcgacgtgacgt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39956459 |
attaacaatcgcaaaacaaaaaccaaacactcaacacaaccacacttttcactcatcatcttcatcgtaacatggcttcagaacctcatcgacgtgacgt |
39956558 |
T |
|
| Q |
116 |
cgaaacctccgatgaacaacttgatgagatttccgttgaaaaggggtttgaaggaaaatctgttccttcgtggcagaaacaggttacggttagggcaata |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39956559 |
cgaaacctccgatgaacaacttgatgagatttccattgaaaaagggtttgaaggaaaatctgttccttcgtggcagaaacaggttacggctagggcaata |
39956658 |
T |
|
| Q |
216 |
gtagtgagtatcatgttatcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattc |
288 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39956659 |
gtcgtgagtatcatgctatcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattc |
39956731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 126 - 322
Target Start/End: Complemental strand, 28750890 - 28750694
Alignment:
| Q |
126 |
gatgaacaacttgatgagatttccgttgaaaaggggtttgaaggaaaatctgttccttcgtggcagaaacaggttacggttagggcaatagtagtgagta |
225 |
Q |
| |
|
||||||||||| || |||||||| || ||||| ||||||||||||| |||||||||| |||||||||||||||| || |||||||||||| | | |||| |
|
|
| T |
28750890 |
gatgaacaactcgaggagatttctgtggaaaaagggtttgaaggaacatctgttcctacgtggcagaaacaggtcactgttagggcaatatttgcgagtc |
28750791 |
T |
|
| Q |
226 |
tcatgttatcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattccctctttgaatgtttcggctgggttgttagggtt |
322 |
Q |
| |
|
||||||| || ||||||||||| || || ||||||||| |||||||||| |||||||||||||| || ||||||||||| ||||| ||||||||||| |
|
|
| T |
28750790 |
tcatgttgtcggtgatgttcacgtttatcgtgatgaagttgaatctcacaactgggattattccttcgttgaatgtttctgctggattgttagggtt |
28750694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 151 - 322
Target Start/End: Complemental strand, 28742020 - 28741849
Alignment:
| Q |
151 |
ttgaaaaggggtttgaaggaaaatctgttccttcgtggcagaaacaggttacggttagggcaatagtagtgagtatcatgttatcagtgatgttcacttt |
250 |
Q |
| |
|
||||||| ||||||||||||||| ||||||| |||||||||| |||||||| ||||||||| || | |||||| ||||||| || || |||||||| || |
|
|
| T |
28742020 |
ttgaaaaagggtttgaaggaaaacttgttcctacgtggcagaagcaggttactgttagggcattattcgtgagtctcatgttgtcggtaatgttcacgtt |
28741921 |
T |
|
| Q |
251 |
cattgtgatgaagctgaatctcactactgggattattccctctttgaatgtttcggctgggttgttagggtt |
322 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
28741920 |
cattgtgatgaaactgaatctcacaactgggattattccttctttgaatgtttcagctgggttgttagggtt |
28741849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 319
Target Start/End: Complemental strand, 7963852 - 7963656
Alignment:
| Q |
125 |
cgatgaacaacttgatgagatttccgttgaaaaggggtttgaaggaaaa-tctgttccttcgtggcagaaacaggttacggttagggcaatagtagtgag |
223 |
Q |
| |
|
|||||||||| | || ||||||| || ||||| | ||||||||||||| || ||||| ||||||||| | |||| ||||||| | ||| | ||||| |
|
|
| T |
7963852 |
cgatgaacaattagaggagatttatgtggaaaaagtgtttgaaggaaaaatcaattcctatatggcagaaaaatgttatggttaggcctatattcgtgag |
7963753 |
T |
|
| Q |
224 |
tatcatgtta-tcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattccctctttgaatgtttcggctgggttgttagg |
319 |
Q |
| |
|
| ||||||| || |||||||||| ||||| ||||||| ||||||||||| ||||||||||||| || |||||||||| |||||||||||||| |
|
|
| T |
7963752 |
tctcatgttggtcgatgatgttcacattcatcatgatgaatctgaatctcacaactgggattattcattcgttgaatgtttttgctgggttgttagg |
7963656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 309
Target Start/End: Complemental strand, 7961298 - 7961143
Alignment:
| Q |
154 |
aaaaggggtttgaaggaaaatctgttccttcgtggcagaaacaggttacggttagggcaatagtagtgagtatcatgttatcagtgatgttcactttcat |
253 |
Q |
| |
|
|||| ||||||||||||||||| |||||| |||||| || | || ||||||| ||| ||| | |||||| || | || | || |||||||| ||||| |
|
|
| T |
7961298 |
aaaaagggtttgaaggaaaatcagttcctatgtggcaccaaaatgtcacggttatggctatattcgtgagtctcgttttgacggtaatgttcacattcat |
7961199 |
T |
|
| Q |
254 |
tgtgatgaagctgaatctcactactgggattattccctctttgaatgtttcggctg |
309 |
Q |
| |
|
||||||||||| |||||||| ||||| |||||||| || || |||||||| |||| |
|
|
| T |
7961198 |
cgtgatgaagctcaatctcacaactggaattattccttcattaaatgtttctgctg |
7961143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University