View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16638_high_52 (Length: 283)
Name: NF16638_high_52
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_high_52 |
 | |
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| [»] chr7 (14 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 14 - 283
Target Start/End: Complemental strand, 4845655 - 4845386
Alignment:
| Q |
14 |
gaaggcatcgacacaacttcgattccgttaacgaaagcataaaaaggattcaattcgtttatgttgttcggaatgaaagttatgtttagcttcccatttg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4845655 |
gaaggcatcgacacaacttcgattccgttaacgaaagcataaaaaggattcaattcgtttatgttgttcggaaagaaagttatgtttagcttcccatttg |
4845556 |
T |
|
| Q |
114 |
gtttgatctgaatgcaatattctttggtaattttttccacctcgtcatgaagccaaagtgaagggctgaagtttttaagaagggtaagattgttgtttac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4845555 |
gtttgatctgaatgcaatattctttggtaattttttccacctcgtcatgaagccaaagtgaagggctgaagtttttaagaagggtaagattgttgtttac |
4845456 |
T |
|
| Q |
214 |
ttcgacagagaaaagagcattgaagggatcaaagttctggtatgaagttgggtaaaaatgaaggcgaata |
283 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4845455 |
ttcgacagagaaaagagcattggagggatcaaagttctggtatgaagttgggtaaaaatgaaggcgaata |
4845386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 14 - 283
Target Start/End: Complemental strand, 4711715 - 4711458
Alignment:
| Q |
14 |
gaaggcatcgacacaacttcgattccgttaacgaaagcataaaaaggattcaattcgtttatgttgttcggaatgaaagttatgtttagcttcccatttg |
113 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| |||||||||| ||||||| | | ||||||||||| ||||||||||||||| |||||||| |||||| |
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|
| T |
4711715 |
gaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatttg |
4711616 |
T |
|
| Q |
114 |
gtttgatctgaatgcaatattctttggtaattttttccacctcgtcatgaagccaaagtgaagggctgaagtttttaagaagggtaagattgttgtttac |
213 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||| ||| | || |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4711615 |
gtttgatttgaatgcaatattctttggtgattttttccttctcataat------------aagggctgaagtttttaagaagggtaagattgttgtttac |
4711528 |
T |
|
| Q |
214 |
ttcgacagagaaaagagcattgaagggatcaaagttctggtatgaagttgggtaaaaatgaaggcgaata |
283 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
4711527 |
tttgacagagaaaagagcattggagggatcaaagttttggtatgaagttgggtaaaaatgaaggctaata |
4711458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 14 - 281
Target Start/End: Complemental strand, 4783478 - 4783211
Alignment:
| Q |
14 |
gaaggcatcgacacaacttcgattccgttaacgaaagcataaaaaggattcaattcgtttatgttgttcggaatgaaagttatgtttagcttcccatttg |
113 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||| |||| |||||| |||| ||||||| |||||||||||||||||||||||| | |||| |
|
|
| T |
4783478 |
gaaggcatagacacaacttcgattccgttaatgaaagcataactaggaatcaattggtttgtgttgttgggaatgaaagttatgtttagcttctcgtttg |
4783379 |
T |
|
| Q |
114 |
gtttgatctgaatgcaatattctttggtaattttttccacctcgtcatgaagccaaagtgaagggctgaagtttttaagaagggtaagattgttgtttac |
213 |
Q |
| |
|
||||||| || ||| ||||||||||| || | | | | || | ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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|
| T |
4783378 |
gtttgatttggatggaatattctttgacgatatgattctcatcatgatgaagccaaagtgaagggttgaagtttttaagaagggtaatgttgttgtttac |
4783279 |
T |
|
| Q |
214 |
ttcgacagagaaaagagcattgaagggatcaaagttctggtatgaagttgggtaaaaatgaaggcgaa |
281 |
Q |
| |
|
||| ||||||||||| |||| ||| ||||| || || |||||||||||||||||||||||||||| |
|
|
| T |
4783278 |
ttcaacagagaaaagtgcataagaggtttcaaaattttgatatgaagttgggtaaaaatgaaggcgaa |
4783211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 14 - 281
Target Start/End: Complemental strand, 4815907 - 4815640
Alignment:
| Q |
14 |
gaaggcatcgacacaacttcgattccgttaacgaaagcataaaaaggattcaattcgtttatgttgttcggaatgaaagttatgtttagcttcccatttg |
113 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||| |||| |||||| |||| ||||||| |||||||||||||||||||||||| | |||| |
|
|
| T |
4815907 |
gaaggcatagacacaacttcgattccgttaatgaaagcataactaggactcaattggtttgtgttgttgggaatgaaagttatgtttagcttctcgtttg |
4815808 |
T |
|
| Q |
114 |
gtttgatctgaatgcaatattctttggtaattttttccacctcgtcatgaagccaaagtgaagggctgaagtttttaagaagggtaagattgttgtttac |
213 |
Q |
| |
|
||||||| || ||| ||||||||||| || | | | | || | ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
4815807 |
gtttgatttggatggaatattctttgacgatatgattctcatcatgatgaagccaaagtgaagggttgaagtttttaagaagggtaatgttgttgtttac |
4815708 |
T |
|
| Q |
214 |
ttcgacagagaaaagagcattgaagggatcaaagttctggtatgaagttgggtaaaaatgaaggcgaa |
281 |
Q |
| |
|
||| ||||||||||| |||| ||| ||||| || || |||||||||||||||||||||||||||| |
|
|
| T |
4815707 |
ttcaacagagaaaagtgcataagaggtttcaaaattttgatatgaagttgggtaaaaatgaaggcgaa |
4815640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 14 - 279
Target Start/End: Original strand, 4653948 - 4654213
Alignment:
| Q |
14 |
gaaggcatcgacacaacttcgattccgttaacgaaagcataaaaaggattcaattcgtttatgttgttcggaatgaaagttatgtttagcttcccatttg |
113 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||| |||||||||| ||||||| | | |||| ||||||| |||||||||||||||||||||||| ||| | |
|
|
| T |
4653948 |
gaaggcatagacacaacttcaattccattaatgaaagcataataaggatttgaatggtttgtgttgttgggaatgaaagttatgtttagcttcttattcg |
4654047 |
T |
|
| Q |
114 |
gtttgatctgaatgcaatattctttggtaattttttccacctcgtcatgaagccaaagtgaagggctgaagtttttaagaagggtaagattgttgtttac |
213 |
Q |
| |
|
||| || || ||||||||||||||||| ||| ||||| | || ||||||| |||||||||||| |||||||||||||||| ||||| ||||||||||| |
|
|
| T |
4654048 |
gttggacttggatgcaatattctttggtgattgtttccccatcatcatgaatccaaagtgaaggattgaagtttttaagaagtgtaagtttgttgtttac |
4654147 |
T |
|
| Q |
214 |
ttcgacagagaaaagagcattgaagggatcaaagttctggtatgaagttgggtaaaaatgaaggcg |
279 |
Q |
| |
|
||| ||||||||||| ||||| |||| ||||| || || || ||||| ||||||||||||||||| |
|
|
| T |
4654148 |
ttcaacagagaaaagtgcatttgagggttcaaatttttgatacgaagtagggtaaaaatgaaggcg |
4654213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 4696833 - 4696613
Alignment:
| Q |
14 |
gaaggcatcgacacaacttcgattccgttaacgaaagcataaaaaggattcaattcgtttatgttgttcggaatgaaagttatgtttagcttcccatttg |
113 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| |||||||||| ||||||| | | |||||||||| | ||||||||||||||||||| |||| |||||| |
|
|
| T |
4696833 |
gaaggcattgacacaacttctattccgttaatgaaagcataataaggatttgactggtttatgttgctgggaatgaaagttatgtttaacttctcatttg |
4696734 |
T |
|
| Q |
114 |
gtttgatctgaatgcaatattctttggtaattttttccacctcgtcatgaagccaaagtgaagggctgaagtttttaagaagggtaagattgttgtttac |
213 |
Q |
| |
|
||||| | |||||||||||||||||||| |||||||| | || | || | |||||| |||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
4696733 |
gtttggtttgaatgcaatattctttggtgattttttcgtcatcatgatagaaccaaagagaagggttgaagtttttaagaagggtaacgttgttgtttac |
4696634 |
T |
|
| Q |
214 |
ttcgacagagaaaagagcatt |
234 |
Q |
| |
|
|| ||||||||||| ||||| |
|
|
| T |
4696633 |
tttaacagagaaaagtgcatt |
4696613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 14 - 281
Target Start/End: Original strand, 4864374 - 4864644
Alignment:
| Q |
14 |
gaaggcatcgacacaacttcgattccgttaacgaaagcataaaaaggattcaattcgtttatgttgtt---cggaatgaaagttatgtttagcttcccat |
110 |
Q |
| |
|
|||||||| ||||| ||||| ||||| |||| ||| |||||| ||||||| ||| ||||| || || ||||||||||||||||||||||||| ||| |
|
|
| T |
4864374 |
gaaggcatagacacgacttctattccattaatgaaggcataataaggatttgattgatttatattattggccggaatgaaagttatgtttagcttctcat |
4864473 |
T |
|
| Q |
111 |
ttggtttgatctgaatgcaatattctttggtaattttttccacctcgtcatgaagccaaagtgaagggctgaagtttttaagaagggtaagattgttgtt |
210 |
Q |
| |
|
||| |||||| |||||||||||||||||||| ||||||||| | || ||||||| ||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
4864474 |
ttgatttgatttgaatgcaatattctttggtgattttttccccatcttcatgaatccaaagtgaagggttgaagtttttaagaagggtaattttgttgtt |
4864573 |
T |
|
| Q |
211 |
tacttcgacagagaaaagagcattgaagggatcaaagttctggtatgaagttgggtaaaaatgaaggcgaa |
281 |
Q |
| |
|
|||||| || || |||| || || | || |||||||| || || || ||||||||||||||||| |||| |
|
|
| T |
4864574 |
tacttcaactgaaaaaaatgctttcgaaggttcaaagttttgataagatgttgggtaaaaatgaagacgaa |
4864644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 14 - 281
Target Start/End: Original strand, 4637309 - 4637573
Alignment:
| Q |
14 |
gaaggcatcgacacaacttcgattccgttaacgaaagcataaaaaggattcaattcgtttatgttgttcggaatgaaagttatgtttagcttcccatttg |
113 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| ||||||||| ||||||| ||| ||||||| |||| ||||||||||||||||||| ||| |||||| |
|
|
| T |
4637309 |
gaaggcattgacacaacttcgatcccgttaataaaagcataacaaggatttgattggtttatgctgttaggaatgaaagttatgtttaacttttcatttg |
4637408 |
T |
|
| Q |
114 |
gtttgatctgaatgcaatattctttggtaattttttccacctcgtcatgaagccaaagtgaagggctgaagtttttaagaagggtaagattgttgtttac |
213 |
Q |
| |
|
||||||| || ||||||||||||||||| |||||||| | || || |||||||| ||||| |||||||||||||||||||||| || ||| || |
|
|
| T |
4637409 |
gtttgatttgtatgcaatattctttggtgattttttcgtcatcaaaatagagccaaagcaaagggttgaagtttttaagaagggtaag---gtcgttcac |
4637505 |
T |
|
| Q |
214 |
ttcgacagagaaaagagcattgaagggatcaaagttctggtatgaagttgggtaaaaatgaaggcgaa |
281 |
Q |
| |
|
|| ||||||||||| ||| || | || |||||||| || || || || |||||||||||||| |||| |
|
|
| T |
4637506 |
tttgacagagaaaattgcactggaaggttcaaagttttgataagatgtagggtaaaaatgaagacgaa |
4637573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 281
Target Start/End: Original strand, 4673155 - 4673422
Alignment:
| Q |
14 |
gaaggcatcgacacaacttcgattccgttaacgaaagcataaaaaggattcaattcgtttatgttgttcggaatgaaagttatgtttagcttcccatttg |
113 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| ||||||||| | ||| ||| ||| ||| || | ||||||||| |||||||||||||| |||| | |
|
|
| T |
4673155 |
gaaggcattgacacaatttcgattccgttaatgaaagcatatttaacatttgatttgttcatgatgcttggaatgaaatttatgtttagcttctcattgg |
4673254 |
T |
|
| Q |
114 |
gtttgatctgaatgcaatattctttggtaattttttccacctcgtcatgaagccaaagtgaagggctgaagtttttaagaagggtaagattgttgtttac |
213 |
Q |
| |
|
| ||||| || || ||| |||||||||| ||| ||||| | | ||||||| |||||| ||||| ||||||||||||||||||||| ||||||||| || |
|
|
| T |
4673255 |
gcttgatttggatacaaaattctttggtgattgtttcctcataatcatgaatccaaaggaaagggttgaagtttttaagaagggtaatattgttgttaac |
4673354 |
T |
|
| Q |
214 |
ttcgacagagaaaagagcattgaagggatcaaagttctggtatgaagttgggtaaaaatgaaggcgaa |
281 |
Q |
| |
|
|| || |||||||| |||||| ||||||||||| | | || || ||||||||||||||||||||| |
|
|
| T |
4673355 |
tttgatagagaaaattgcattggagggatcaaagcttttagataaatttgggtaaaaatgaaggcgaa |
4673422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 83 - 281
Target Start/End: Original strand, 4644216 - 4644414
Alignment:
| Q |
83 |
ggaatgaaagttatgtttagcttcccatttggtttgatctgaatgcaatattctttggtaattttttccacctcgtcatgaagccaaagtgaagggctga |
182 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||| || || |||||||| |||||| | || || | | | || | ||||||||||||||||||| ||| |
|
|
| T |
4644216 |
ggaatgaaagttatgtttagcttctcatttgttttaatttggatgcaatactctttgatgatattattctcatcatgatgaagccaaagtgaagggttga |
4644315 |
T |
|
| Q |
183 |
agtttttaagaagggtaagattgttgtttacttcgacagagaaaagagcattgaagggatcaaagttctggtatgaagttgggtaaaaatgaaggcgaa |
281 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||| |||||||||||| ||||| |||| ||||| || || || || | |||||||||| |||||||| |
|
|
| T |
4644316 |
agttttgaagaagggtgagattgttgtttactttgacagagaaaagtgcatttgagggttcaaaattttgatacgatgcagggtaaaaataaaggcgaa |
4644414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 182 - 281
Target Start/End: Original strand, 4663310 - 4663409
Alignment:
| Q |
182 |
aagtttttaagaagggtaagattgttgtttacttcgacagagaaaagagcattgaagggatcaaagttctggtatgaagttgggtaaaaatgaaggcgaa |
281 |
Q |
| |
|
||||||||||||||||||||||||| ||||| || |||||||||||| |||||| |||| |||||||| | || || |||| ||||||||||||||||| |
|
|
| T |
4663310 |
aagtttttaagaagggtaagattgtcgtttagtttgacagagaaaagtgcattggagggttcaaagtttttataagatgttgagtaaaaatgaaggcgaa |
4663409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 281
Target Start/End: Original strand, 4667538 - 4667657
Alignment:
| Q |
162 |
gaagccaaagtgaagggctgaagtttttaagaagggtaagattgttgtttacttcgacagagaaaagagcattgaagggatcaaagttctggtatgaagt |
261 |
Q |
| |
|
||||||||||||||||||| |||| ||| ||||||||||| ||| | ||||| ||| | ||| ||||| ||| ||| |||||||| || || || || |
|
|
| T |
4667538 |
gaagccaaagtgaagggctaaagtctttgagaagggtaaggttggttcctactttgactgtgaagagagcgttggaggtttcaaagttttgatacgatgt |
4667637 |
T |
|
| Q |
262 |
tgggtaaaaatgaaggcgaa |
281 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
4667638 |
tgggtaaaaatggaggcgaa |
4667657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 4644159 - 4644200
Alignment:
| Q |
14 |
gaaggcatcgacacaacttcgattccgttaacgaaagcataa |
55 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
4644159 |
gaaggcatagacacaacttcgattccgttaatgaaagcataa |
4644200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 141
Target Start/End: Original strand, 4631451 - 4631509
Alignment:
| Q |
83 |
ggaatgaaagttatgtttagcttcccatttggtttgatctgaatgcaatattctttggt |
141 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || || ||||||||||||||||| |
|
|
| T |
4631451 |
ggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttggt |
4631509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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