View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_high_56 (Length: 268)
Name: NF16638_high_56
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_high_56 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 24726792 - 24727013
Alignment:
| Q |
2 |
ttacttcataatgatgtttgtcgggtttaaatttttgttaagatgaaacctccaaaaattctacattacaatgctacatttaatttgttgttatttttaa |
101 |
Q |
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| T |
24726792 |
ttacttcataatgatgtttgtcgggtttaaatttttgttaagatgaaacctccaaaaattctacattacaatgctacatttaatttgttgttatttttaa |
24726891 |
T |
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| Q |
102 |
agcttgtgcttaaaatggtaagtttacgagctcttataagtgaaccaccttaggttgcatatacacatttgacctccacaccaaaatgtgacatgtgacc |
201 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
24726892 |
agcttgtgcttaaaatggtaagtttatgagctcttataagtgaaccaccttaggttgcatacacacatttgacctccacaccaaaatgtgacacgtgacc |
24726991 |
T |
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| Q |
202 |
tccttgtacaatgtaaatccat |
223 |
Q |
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||||||||| ||| ||||||| |
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| T |
24726992 |
tccttgtaccgtgtgaatccat |
24727013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 11778273 - 11778214
Alignment:
| Q |
129 |
gagctcttataagtgaaccaccttaggttgcatatacacatttgacctccacaccaaaatg |
189 |
Q |
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|||| |||||| |||||||||||||||| | | | |||||||||||||||||||||||||| |
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| T |
11778273 |
gagcacttataggtgaaccaccttaggtggta-acacacatttgacctccacaccaaaatg |
11778214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 4381615 - 4381568
Alignment:
| Q |
129 |
gagctcttataagtgaaccaccttaggttgcatatacacatttgacct |
176 |
Q |
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||||||||||| ||||||||||||| || ||||| ||||||||||||| |
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| T |
4381615 |
gagctcttataggtgaaccaccttaagtggcatacacacatttgacct |
4381568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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