View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_high_6 (Length: 596)
Name: NF16638_high_6
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 19 - 588
Target Start/End: Complemental strand, 44437456 - 44436887
Alignment:
| Q |
19 |
tatttaagcctgtcacggacgctatagatgaagccattattctaaagcatatacccgtaattatgaaggtgtaagcgcccaaaatatcaattaccaaaag |
118 |
Q |
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| T |
44437456 |
tatttaagcctgtcacggacgctatagatgaaaccattattctaaagtatatacccgtaattatgaaggtgtaagcgcccaaaatatcaattaccaaaaa |
44437357 |
T |
|
| Q |
119 |
tacgctatttcttttagtcgttcaaatgtcacttatcatgtaggagtcatttaggttatggatcgaggtaaatattttggcattacttccatcatgatgg |
218 |
Q |
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|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44437356 |
tacgctatttcttttagtcgttcaaacgtcacttatcctgtaggagtcatttaggttatggatcgaggtaaatattttggcattacttccatcatgatgg |
44437257 |
T |
|
| Q |
219 |
gtagggacaagaggtctatgtttgctttcgttaatgattgtatatgaaagaacattcaacatggaattctggatccttctcgatagtaagtaaataatta |
318 |
Q |
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| T |
44437256 |
gtagggacaagaggtctatgtttgctttcgttaatgattgtatatgaaagaacattcaacatggaattctggatccttctcgatagtaagtaaataatta |
44437157 |
T |
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| Q |
319 |
gtttttatgaaagtattagttcaagtcatctcatcctgttttatgggtgtttttcttctccctactactttgggtgaggaaattgagctcatgttaaatt |
418 |
Q |
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|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44437156 |
gtttttatgaaagtattagt--aagtcatctcatcttgttttatgggtgtttttcttctccctactactttgggtgaggaaattgagctcatgttaaatt |
44437059 |
T |
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| Q |
419 |
ccctatgttggaaaaccnnnnnnntggtggtcataaccttgaggttaaggtaggatagagcgacaaacaaatatcatggcgggctaaatttatgggactt |
518 |
Q |
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||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44437058 |
ccctatgttggaataccaaaaaaatggtggtcataaccttgaggttaaggtaggatagagcgacaaacaaatatcatggcgggctaaatttatgggactt |
44436959 |
T |
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| Q |
519 |
tgaaggtttttaccttgtcatgttaaggttaacaagggtggaaactcggtca--tcacaatctcttcatctc |
588 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
44436958 |
tgaaggtttttaccttgccatgttaaggttaacaagggtggaaactcagtcatgtcacaatctcttcatctc |
44436887 |
T |
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