View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_high_61 (Length: 250)
Name: NF16638_high_61
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_high_61 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 9415723 - 9415477
Alignment:
| Q |
1 |
ccaacataatagatctattaggctctttgcataattatgacatgtgaattggtatacatcaagataaatctatatgaatttctataaaatgatttgaggc |
100 |
Q |
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||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9415723 |
ccaacataatacatctattaggctcttttcataattatgacatgtgaattggtatacatcaagataaatctatatgaatttctataaaatgatttgaggc |
9415624 |
T |
|
| Q |
101 |
acactcacactca------agatccaaagacaaatcacataagcaattataaacagctcaaaatccaaaggcaaaccaatcaaaacagagactagtgatc |
194 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
9415623 |
acactcacactcacactcaagatccaaagacaaatcacataagcaattataaacagcccaaaatccaaaggcaaaccaatcaaaacagagactagtgatc |
9415524 |
T |
|
| Q |
195 |
agatctaagagtgtggagtttgtgtcattattacttttggttcatct |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9415523 |
agatctaagagtgtggagtttgtgtcattattacttttggttcatct |
9415477 |
T |
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