View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_high_62 (Length: 249)
Name: NF16638_high_62
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_high_62 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 44233414 - 44233173
Alignment:
| Q |
1 |
aaggaggtaagcttggatcttgatcgaagatgttgcatccgtatctatatgtggctgggaaactattttatcaacattcttttgaagatattgtcatatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44233414 |
aaggaggtaagcttggatcttgatcgaagatgttgcatctgtatctat--gtggctgggaaactattttatcaacattcttttgaagatattgtcatatt |
44233317 |
T |
|
| Q |
101 |
aatgtgacacgttaatacggctacatatatatggttgaggttaatgcacgtatgagaagaaatgttacacttttcccttcctttttcctctccaatagga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44233316 |
aatgtgacacgttaatacggctacatatatatggttgaggttaatgcacgtatgagaagaaatgttacacttttcccttccttttccctctccaatagga |
44233217 |
T |
|
| Q |
201 |
ataagacataaataagcagccaattttgactgttttcatctcac |
244 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
44233216 |
ataagacataaataagcagccaattttgactgtttccttctcac |
44233173 |
T |
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