View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_high_65 (Length: 241)
Name: NF16638_high_65
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_high_65 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 2565397 - 2565178
Alignment:
| Q |
1 |
ttagagccggtatgatttgattatatatagattttaattttagatcaagctaacttgttccctaagatatatgttaatgaattcataaatactaattatg |
100 |
Q |
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| T |
2565397 |
ttagagccggtatgatttgattatatatagattttaattttagatcaagctaacttgtttcctaagaaatatgttaacgaattcataaatactaattatg |
2565298 |
T |
|
| Q |
101 |
tcttgaag--nnnnnnnncattttaaaactataatgtatacaatttcaaatacaaagtttatannnnnnnnacattaacaaatgttttttgtaataacat |
198 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2565297 |
tcttgaagaaaaaaaaaacattttaaaactataatgtatacaatttcaaatacaaagtttatactctttttacattaacaaatgttttttgtaataacat |
2565198 |
T |
|
| Q |
199 |
taaaaatgttctaagcccac |
218 |
Q |
| |
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|||||||||||||||||||| |
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| T |
2565197 |
taaaaatgttctaagcccac |
2565178 |
T |
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