View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16638_high_69 (Length: 233)
Name: NF16638_high_69
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_high_69 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 2688215 - 2688430
Alignment:
| Q |
1 |
ccaactccactcataatacaaacatgccggagtattcgatcgacttaacatccacctccacgtcaacactttaacctcctccactacctcctcccaccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2688215 |
ccaactccactcataatacaaacatgccggagtattcgatcgacttaacatccacctccacgtcaacactttaacctcctccactacctcctcccaccta |
2688314 |
T |
|
| Q |
101 |
gcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatcatccgcaagccattccggattttctcattta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2688315 |
gcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatcatccgcaagccattccggattttcttattta |
2688414 |
T |
|
| Q |
201 |
gtggtccccactccaa |
216 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
2688415 |
gtggtccccactccaa |
2688430 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 22197272 - 22197102
Alignment:
| Q |
1 |
ccaactccactcataatacaaacatgccggagtattcgatcgacttaacatccacctccacgtcaacactttaacctcctccactacctcctcccaccta |
100 |
Q |
| |
|
|||||||||||||||| |||| ||| ||| || ||| |||| | | || ||| ||||||| ||||||||| ||||||||||||| | | ||||| ||| |
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| T |
22197272 |
ccaactccactcataaaacaagcataccgtagaatttgatcttccaagcaaccatctccacgacaacacttttacctcctccactagcacatcccatcta |
22197173 |
T |
|
| Q |
101 |
gcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatcat |
171 |
Q |
| |
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||| |||||||||||||||| | ||||||||||| ||||||| ||||||| | |||||||||||||||| |
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|
| T |
22197172 |
gcaataacattattaaaaattcggtcatttctagccttccaaatcacccaaatcccggcctcccaaatcat |
22197102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 22240549 - 22240719
Alignment:
| Q |
1 |
ccaactccactcataatacaaacatgccggagtattcgatcgacttaacatccacctccacgtcaacactttaacctcctccactacctcctcccaccta |
100 |
Q |
| |
|
|||||||||||||||| |||| ||| ||| || ||| |||| | | || ||| ||||||| ||||||||| ||||||||||||| | | ||||| ||| |
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|
| T |
22240549 |
ccaactccactcataaaacaagcataccgtagaatttgatcttccaagcaaccatctccacgacaacacttttacctcctccactagcacatcccatcta |
22240648 |
T |
|
| Q |
101 |
gcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatcat |
171 |
Q |
| |
|
||| |||||||||||||||| | ||||||||||| ||||||| ||||||| | |||||||||||||||| |
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|
| T |
22240649 |
gcaataacattattaaaaattcggtcatttctagccttccaaatcacccaaatcccggcctcccaaatcat |
22240719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 39845208 - 39845015
Alignment:
| Q |
1 |
ccaactccactcataatacaaacatgccggagtattcgatcgacttaacatccacctccacgtcaacactttaacctcctccactacctcctcccaccta |
100 |
Q |
| |
|
||||||||| |||||| ||| ||| |||||| ||| ||| || ||| | | ||||||| | || |||||| ||||||||||| | ||| |||||||| |
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|
| T |
39845208 |
ccaactccattcataaaacatacacgccggaacattgaatctacctaagagcaacctccaagacatcacttttacctcctccaccaactcatcccacctc |
39845109 |
T |
|
| Q |
101 |
gcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatcatccgcaagccattccggattttct |
194 |
Q |
| |
|
||||| ||||||||||||| | |||||||| || ||||||| ||||||| || ||||||| ||||| ||||| || ||||| ||||||| |
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|
| T |
39845108 |
gcattttcattattaaaaatccggtcatttctcgccttccaaatcacccaaattaccacctcccatatcatacgcaatcccttccgaattttct |
39845015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 46 - 194
Target Start/End: Original strand, 42773716 - 42773864
Alignment:
| Q |
46 |
taacatccacctccacgtcaacactttaacctcctccactacctcctcccacctagcattaacattattaaaaatgcaatcatttctagcattccaaaag |
145 |
Q |
| |
|
||||| ||||||||| | ||||||||||||||||||||||| ||| |||| | || | ||||| || |||||||| ||||||||||| ||||||| |
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|
| T |
42773716 |
taacaaccacctccaagacaacactttaacctcctccactaactcaacccatcccgctatgacattgttgaaaatgcactcatttctagccttccaaatt |
42773815 |
T |
|
| Q |
146 |
acccaaaccacggcctcccaaatcatccgcaagccattccggattttct |
194 |
Q |
| |
|
||||||| |||||||||||||||||| ||||| ||||| |||| ||||| |
|
|
| T |
42773816 |
acccaaatcacggcctcccaaatcatacgcaaaccattacggactttct |
42773864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 186
Target Start/End: Original strand, 52612788 - 52612922
Alignment:
| Q |
52 |
ccacctccacgtcaacactttaacctcctccactacctcctcccacctagcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaa |
151 |
Q |
| |
|
||||||||| | ||||||||| |||| |||||| | ||| ||||| |||||| ||||||| ||||| | |||||| || || ||||| || |||||| |
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|
| T |
52612788 |
ccacctccatgacaacactttcaccttctccacaagctcatcccatggagcattctcattattgaaaatacgatcattcctcgctttccacaaaacccaa |
52612887 |
T |
|
| Q |
152 |
accacggcctcccaaatcatccgcaagccattccg |
186 |
Q |
| |
|
| ||| ||||||||||||||| ||| || ||||| |
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|
| T |
52612888 |
atcaccacctcccaaatcatcctcaatcccttccg |
52612922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 20794616 - 20794441
Alignment:
| Q |
1 |
ccaactccactcataatacaaacatgccggagtattcgatcgacttaacatccacctccacgtcaacactttaacctcctccactacctcctcccaccta |
100 |
Q |
| |
|
|||||||||||||||| |||| || ||| || ||| |||| || || || ||| ||||| | || |||||||||||||||||||| ||| ||| | ||| |
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|
| T |
20794616 |
ccaactccactcataaaacaagcaaaccgtagaatttgatctacctagcaaccatctccaagacatcactttaacctcctccactaactcatcctatcta |
20794517 |
T |
|
| Q |
101 |
gcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatcatccgcaa |
177 |
Q |
| |
|
||| || ||||||||||| |||| ||||||||||| ||||||| ||||||| | || ||| ||||||||||||||| |
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|
| T |
20794516 |
gcaatagcattattaaaattgcactcatttctagccttccaaatcacccaaatcccgacct-ccaaatcatccgcaa |
20794441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 186
Target Start/End: Complemental strand, 14459570 - 14459456
Alignment:
| Q |
72 |
taacctcctccactacctcctcccacctagcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatcat |
171 |
Q |
| |
|
|||||||||| || | ||| |||||||||||| | ||||||||||||||| ||||| ||||| ||||| ||||||||| | ||||||| ||||| |
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|
| T |
14459570 |
taacctcctcaacaagctcatcccacctagcaatcccattattaaaaatgccctcattcctagcgcgccaaattacccaaaccgctacctcccatatcat |
14459471 |
T |
|
| Q |
172 |
ccgcaagccattccg |
186 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
14459470 |
ccgcaagcccttccg |
14459456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 46 - 194
Target Start/End: Original strand, 5201117 - 5201265
Alignment:
| Q |
46 |
taacatccacctccacgtcaacactttaacctcctccactacctcctcccacctagcattaacattattaaaaatgcaatcatttctagcattccaaaag |
145 |
Q |
| |
|
||||| ||| |||||| |||||| |||||||||||||||| ||| |||||||| ||| |||||||||||||||| | ||||||| || ||||||| | |
|
|
| T |
5201117 |
taacaaccatctccacaacaacaccttaacctcctccactaactcatcccaccttgcaataacattattaaaaataaacccatttctcgccttccaaatg |
5201216 |
T |
|
| Q |
146 |
acccaaaccacggcctcccaaatcatccgcaagccattccggattttct |
194 |
Q |
| |
|
||||||| |||| | ||||||||| | ||| || || |||||||||| |
|
|
| T |
5201217 |
acccaaattgcggcttgccaaatcattctcaaacccttacggattttct |
5201265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 192
Target Start/End: Original strand, 7115020 - 7115160
Alignment:
| Q |
52 |
ccacctccacgtcaacactttaacctcctccactacctcctcccacctagcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaa |
151 |
Q |
| |
|
||||||||||| || || || ||||||||||||| ||| ||||||||||| | |||| || ||||| ||| ||||||| || |||||| |||||| |
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|
| T |
7115020 |
ccacctccacgacataaccttgacctcctccactaactcatcccacctagctatctcattgttgaaaatacaaccatttctcgccctccaaataacccaa |
7115119 |
T |
|
| Q |
152 |
accacggcctcccaaatcatccgcaagccattccggatttt |
192 |
Q |
| |
|
| ||| |||||||||||| || || || ||||||||||| |
|
|
| T |
7115120 |
atcacaacctcccaaatcaacctcattcccttccggatttt |
7115160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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