View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16638_high_70 (Length: 223)

Name: NF16638_high_70
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16638_high_70
NF16638_high_70
[»] chr3 (16 HSPs)
chr3 (99-207)||(16676237-16676345)
chr3 (99-190)||(19350448-19350541)
chr3 (107-207)||(17728550-17728650)
chr3 (107-207)||(19029779-19029879)
chr3 (102-198)||(19392187-19392283)
chr3 (111-198)||(16653360-16653447)
chr3 (111-198)||(19012255-19012342)
chr3 (9-46)||(17722185-17722222)
chr3 (9-46)||(19023414-19023451)
chr3 (1-32)||(16676146-16676177)
chr3 (149-204)||(18015141-18015196)
chr3 (16-46)||(18114703-18114733)
chr3 (9-47)||(19386470-19386508)
chr3 (6-47)||(17728768-17728809)
chr3 (6-47)||(19029997-19030038)
chr3 (6-46)||(19438997-19439037)


Alignment Details
Target: chr3 (Bit Score: 109; Significance: 5e-55; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 99 - 207
Target Start/End: Original strand, 16676237 - 16676345
Alignment:
Q  99 ccattaggaaatatcttatataatcacactagattctcctaacaaatgtcattaagctaccaacaattgtttctagcaatcacatacctatttaaattat 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16676237 ccattaggaaatatcttatataatcacactagattctcctaacaaatgtcattaagctaccaacaattgtttctagcaatcacatacctatttaaattat 16676336  T
Q  199 tactatttt 207  Q
    |||||||||    
T  16676337 tactatttt 16676345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 99 - 190
Target Start/End: Original strand, 19350448 - 19350541
Alignment:
Q  99 ccattaggaaatatcttatataatcacactagat--tctcctaacaaatgtcattaagctaccaacaattgtttctagcaatcacatacctatt 190  Q
    ||||||| ||||||||||||||||||||||||||  |||||||||| ||||||||||||||  ||||| | |||| ||||||||||||||||||    
T  19350448 ccattagcaaatatcttatataatcacactagatcatctcctaacatatgtcattaagctaataacaactctttcaagcaatcacatacctatt 19350541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 107 - 207
Target Start/End: Complemental strand, 17728650 - 17728550
Alignment:
Q  107 aaatatcttatataatcacactagattctcctaacaaatgtcattaagctaccaacaattgtttctagcaatcacatacctatttaaattattactattt 206  Q
    ||||||| ||||||||||||||||| || |||| || |||||||||| |||||||||| |  |||||||||||||||||||  || |||||| |||||||    
T  17728650 aaatatcatatataatcacactagaatcccctatcatatgtcattaaactaccaacaactacttctagcaatcacatacctgattgaattataactattt 17728551  T
Q  207 t 207  Q
    |    
T  17728550 t 17728550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 107 - 207
Target Start/End: Complemental strand, 19029879 - 19029779
Alignment:
Q  107 aaatatcttatataatcacactagattctcctaacaaatgtcattaagctaccaacaattgtttctagcaatcacatacctatttaaattattactattt 206  Q
    ||||||| ||||||||||||||||| || |||| || |||||||||| |||||||||| |  |||||||||||||||||||  || |||||| |||||||    
T  19029879 aaatatcatatataatcacactagaatcccctatcatatgtcattaaactaccaacaactacttctagcaatcacatacctgattgaattataactattt 19029780  T
Q  207 t 207  Q
    |    
T  19029779 t 19029779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 102 - 198
Target Start/End: Original strand, 19392187 - 19392283
Alignment:
Q  102 ttaggaaatatcttatataatcacactagattctcctaacaaatgtcattaagctaccaacaattgtttctagcaatcacatacctatttaaattat 198  Q
    |||| ||| ||| ||||||||||||||| | || ||||||| |||||||||| ||||||| || || ||||||||||||||||||||||| ||||||    
T  19392187 ttagcaaacatcgtatataatcacactaaaatcccctaacatatgtcattaaactaccaaaaactgcttctagcaatcacatacctatttcaattat 19392283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 111 - 198
Target Start/End: Complemental strand, 16653447 - 16653360
Alignment:
Q  111 atcttatataatcacactagattctcctaacaaatgtcattaagctaccaacaattgtttctagcaatcacatacctatttaaattat 198  Q
    ||||||||||||||| || || | |||||||  ||||||||||||||||||||| | |||||| ||||||||||||||||| ||||||    
T  16653447 atcttatataatcactctggaatttcctaacgtatgtcattaagctaccaacaactctttctatcaatcacatacctatttgaattat 16653360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 111 - 198
Target Start/End: Complemental strand, 19012342 - 19012255
Alignment:
Q  111 atcttatataatcacactagattctcctaacaaatgtcattaagctaccaacaattgtttctagcaatcacatacctatttaaattat 198  Q
    ||||||||||||||| || || | |||||||  ||||||||||||||||||||| | |||||| ||||||||||||||||| ||||||    
T  19012342 atcttatataatcactctggaatttcctaacgtatgtcattaagctaccaacaactctttctatcaatcacatacctatttgaattat 19012255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 17722222 - 17722185
Alignment:
Q  9 aacattcatatcactgacttcaaaattcaaagtcttcc 46  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  17722222 aacattcatatcactgatttcaaaattcaaagtcttcc 17722185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 19023451 - 19023414
Alignment:
Q  9 aacattcatatcactgacttcaaaattcaaagtcttcc 46  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  19023451 aacattcatatcactgatttcaaaattcaaagtcttcc 19023414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 16676146 - 16676177
Alignment:
Q  1 ttctcgacaacattcatatcactgacttcaaa 32  Q
    ||||||||||||||||||||||||||||||||    
T  16676146 ttctcgacaacattcatatcactgacttcaaa 16676177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 18015141 - 18015196
Alignment:
Q  149 attaagctaccaacaattgtttctagcaatcacatacctatttaaattattactat 204  Q
    |||||||||||||||| | |||| ||||||||||||||||||  |||||| |||||    
T  18015141 attaagctaccaacaactctttcaagcaatcacatacctattcgaattataactat 18015196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 18114703 - 18114733
Alignment:
Q  16 atatcactgacttcaaaattcaaagtcttcc 46  Q
    |||||||||||||||||||||||||||||||    
T  18114703 atatcactgacttcaaaattcaaagtcttcc 18114733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 19386470 - 19386508
Alignment:
Q  9 aacattcatatcactgacttcaaaattcaaagtcttccc 47  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  19386470 aacattcatatcactaactccaaaattcaaagtcttccc 19386508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 17728809 - 17728768
Alignment:
Q  6 gacaacattcatatcactgacttcaaaattcaaagtcttccc 47  Q
    |||||||||||||||| |||||||||||| |||||| |||||    
T  17728809 gacaacattcatatcattgacttcaaaatccaaagtgttccc 17728768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 19030038 - 19029997
Alignment:
Q  6 gacaacattcatatcactgacttcaaaattcaaagtcttccc 47  Q
    |||||||||||||||| |||||||||||| |||||| |||||    
T  19030038 gacaacattcatatcattgacttcaaaatccaaagtgttccc 19029997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 19438997 - 19439037
Alignment:
Q  6 gacaacattcatatcactgacttcaaaattcaaagtcttcc 46  Q
    |||||||||||||||| ||||| ||||||| ||||||||||    
T  19438997 gacaacattcatatcattgactccaaaatttaaagtcttcc 19439037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University