View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_high_73 (Length: 214)
Name: NF16638_high_73
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_high_73 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 10 - 198
Target Start/End: Complemental strand, 11444480 - 11444292
Alignment:
| Q |
10 |
agagagaagaaagaatgggagaaacttatactcgacgcaggcttcagcagctataagattgcacctatatgcggcttcaaatctatcatcgaagtttatc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||| |
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| T |
11444480 |
agagagaagaaagaatgggagaaacttatactcgacgcaggcttcagcagctataagattactcctatatgcggcttcaagtctatcatcgaagtttatc |
11444381 |
T |
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| Q |
110 |
cttgattttgattagaacttgtttcacttaagttatgattaaaattcaataagtttgtactcataagtcaaattgatagtcacaactga |
198 |
Q |
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| T |
11444380 |
cttaattttgattagaacttgtttcacttaagttatgattaaaattcaataagtttgtactcaaaagtcaaattgatagtcacaactga |
11444292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 10 - 198
Target Start/End: Original strand, 11548628 - 11548816
Alignment:
| Q |
10 |
agagagaagaaagaatgggagaaacttatactcgacgcaggcttcagcagctataagattgcacctatatgcggcttcaaatctatcatcgaagtttatc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||| |
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| T |
11548628 |
agagagaagaaagaatgggagaaacttatactcgacgcaggcttcagcagctataagattactcctatatgcggcttcaagtctatcatcgaagtttatc |
11548727 |
T |
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| Q |
110 |
cttgattttgattagaacttgtttcacttaagttatgattaaaattcaataagtttgtactcataagtcaaattgatagtcacaactga |
198 |
Q |
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| T |
11548728 |
cttaattttgattagaacttgtttcacttaagttatgattaaaattcaataagtttgtactcaaaagtcaaattgatagtcacaactga |
11548816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 10 - 198
Target Start/End: Complemental strand, 11441604 - 11441415
Alignment:
| Q |
10 |
agagagaagaaagaatgggagaaacttatactcgacgcaggcttcagcagctataagattgcacctatatgcggcttcaaatctatcatcgaagtttatc |
109 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11441604 |
agagagaagaaagaatgggagaaactcatattcgacgcaggcttcagcagctataagattacacctatatgcggcttcaaatctatcatcgaagtttatc |
11441505 |
T |
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| Q |
110 |
cttga-ttttgattagaacttgtttcacttaagttatgattaaaattcaataagtttgtactcataagtcaaattgatagtcacaactga |
198 |
Q |
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| T |
11441504 |
cttaatttttgattagaacttgtttcacttaagttatgattaaaattcaataagtttgtactcaaaagtcaaattgatagtcacaactga |
11441415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 10 - 110
Target Start/End: Original strand, 11508286 - 11508386
Alignment:
| Q |
10 |
agagagaagaaagaatgggagaaacttatactcgacgcaggcttcagcagctataagattgcacctatatgcggcttcaaatctatcatcgaagtttatc |
109 |
Q |
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|||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| ||||||||||||| ||||| ||| |||||||||| |||| |
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| T |
11508286 |
agagagaagaaagaatgggagaaactcatattcgacgcaggtttcagcagctataagattacacctatatgcggtttcaagtctctcatcgaagtatatc |
11508385 |
T |
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| Q |
110 |
c |
110 |
Q |
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| T |
11508386 |
c |
11508386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 11524501 - 11524636
Alignment:
| Q |
10 |
agagagaagaaagaatgggagaaacttatactcgacgcaggcttcagcagctataagattgcacctatatgcggcttcaaatctatcatcgaagtttatc |
109 |
Q |
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||||| |||||||||||| ||||||| || ||||| |||||||||||||| |||||| | || ||||| |||||||| ||| | || |||||||||| |
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| T |
11524501 |
agagaaaagaaagaatggaagaaactcatctatgacgctggcttcagcagctacaagattactccaatatgtggcttcaagtctcttatagaagtttatc |
11524600 |
T |
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| Q |
110 |
cttgattttgattagaacttgtttcacttaagttat |
145 |
Q |
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||| ||| | ||||| | ||||| || |||||||| |
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| T |
11524601 |
cttaattctaattagtagttgttgcaaataagttat |
11524636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 11487827 - 11487941
Alignment:
| Q |
10 |
agagagaagaaagaatgggagaaacttatactcgacgcaggcttcagcagctataagattgcacctatatgcggcttcaaatctatcatcgaagtttatc |
109 |
Q |
| |
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||||| |||||||||||| ||||||| || ||||| |||||||||||||| |||||| | || ||||| |||||||| || |||| |||||||||| |
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| T |
11487827 |
agagaaaagaaagaatggaagaaactcatctatgacgctggcttcagcagctacaagattactccaatatgtggcttcaagtcactcatagaagtttatc |
11487926 |
T |
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| Q |
110 |
cttgattttgattag |
124 |
Q |
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| T |
11487927 |
cctaattttaattag |
11487941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 112
Target Start/End: Complemental strand, 11467372 - 11467270
Alignment:
| Q |
10 |
agagagaagaaagaatgggagaaacttatactcgacgcaggcttcagcagctataagattgcacctatatgcggcttcaaatctatcatcgaagtttatc |
109 |
Q |
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||||| |||||||||||| ||||||| ||| || ||||| ||||| ||||| |||||| | || ||||| |||||||| ||| | || |||||||||| |
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| T |
11467372 |
agagaaaagaaagaatggaagaaactcatatatgatgcaggtttcagtagctacaagattactccaatatgtggcttcaagtctcttatagaagtttatc |
11467273 |
T |
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| Q |
110 |
ctt |
112 |
Q |
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||| |
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| T |
11467272 |
ctt |
11467270 |
T |
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