View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16638_high_75 (Length: 204)
Name: NF16638_high_75
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_high_75 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 56252607 - 56252437
Alignment:
| Q |
16 |
atgaaggtttgggtgaagaatctaaagagattaattatagtgataagcctcctgacatagaggaactgagaaggaagaatggttaactggacgggaaaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
56252607 |
atgaaggtttgggtgaagaatctaaagagattaattatggtgataagcctctagacatagaggaactgagaaggaagaatggttgactggacggggaaaa |
56252508 |
T |
|
| Q |
116 |
tccggataaaggacacaatgcccttcacaagggctcaaatgaacataaacgcctttccagagggccgaaac |
186 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||| |||| |
|
|
| T |
56252507 |
cccggataaaggacataatgcccttcacaagggctcaaatgaacataaacacttttccagagggccaaaac |
56252437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 21271489 - 21271549
Alignment:
| Q |
103 |
tggacgggaaaaatccggataaaggacacaatgcccttcacaagggctcaaatgaacataa |
163 |
Q |
| |
|
||||| || |||| |||||||||||||||||||||||||| |||||| ||||||| ||||| |
|
|
| T |
21271489 |
tggaccgggaaaacccggataaaggacacaatgcccttcataagggcccaaatgagcataa |
21271549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 15967896 - 15967963
Alignment:
| Q |
119 |
ggataaaggacacaatgcccttcacaagggctcaaatgaacataaacgcctttccagagggccgaaac |
186 |
Q |
| |
|
|||||||||||| | ||||||| ||||||||||||||||||||||||| | || ||||||||||| |
|
|
| T |
15967896 |
ggataaaggacatcacacccttcataagggctcaaatgaacataaacgccctccccaagggccgaaac |
15967963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 155
Target Start/End: Original strand, 27301135 - 27301166
Alignment:
| Q |
124 |
aaggacacaatgcccttcacaagggctcaaat |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
27301135 |
aaggacacaatgcccttcacaagggctcaaat |
27301166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 30424388 - 30424328
Alignment:
| Q |
103 |
tggacgggaaaaatccggataaaggacacaatgcccttcacaagggctcaaatgaacataa |
163 |
Q |
| |
|
||||| || |||| ||||||||||||||||||| |||||| |||| |||| |||| ||||| |
|
|
| T |
30424388 |
tggactgggaaaacccggataaaggacacaatgtccttcataaggactcagatgatcataa |
30424328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University