View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_high_77 (Length: 203)
Name: NF16638_high_77
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_high_77 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 187
Target Start/End: Complemental strand, 55075423 - 55075251
Alignment:
| Q |
15 |
gaagaatattttagaaaccacacaaaattactaatatcaattaaaattccaaacaacagaagactaatctagctggatagagtagaggttagcatcttca |
114 |
Q |
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| T |
55075423 |
gaagaatattttagaaaccacacaaaattactaatatcaattaaaatttcaaacaacagaagactaatctagctggatagagtagaggttagcatcttca |
55075324 |
T |
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| Q |
115 |
tgtgaagagaggatatcatgatatcacagggccctttatcttacaatgtgttgtcttgatgagaggatttgtg |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
55075323 |
tgtgaagagaggatatcatgatatcacagggccctttatcttacaatgtgttgtcttgatgagatgatttgtg |
55075251 |
T |
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