View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16638_high_8 (Length: 567)

Name: NF16638_high_8
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16638_high_8
NF16638_high_8
[»] chr4 (23 HSPs)
chr4 (18-555)||(56262808-56263343)
chr4 (205-555)||(40347538-40347872)
chr4 (20-131)||(56253787-56253889)
chr4 (223-271)||(7842532-7842580)
chr4 (270-322)||(56262511-56262563)
chr4 (70-131)||(56265492-56265553)
chr4 (216-271)||(20774183-20774238)
chr4 (216-269)||(44792641-44792694)
chr4 (218-271)||(53148614-53148667)
chr4 (223-271)||(30573712-30573760)
chr4 (219-271)||(56262476-56262528)
chr4 (216-271)||(7841539-7841594)
chr4 (224-271)||(26147035-26147082)
chr4 (216-271)||(53732430-53732485)
chr4 (216-270)||(24551927-24551981)
chr4 (224-270)||(53773590-53773636)
chr4 (216-270)||(55976161-55976215)
chr4 (216-268)||(19080380-19080432)
chr4 (218-270)||(24158824-24158876)
chr4 (223-271)||(24374791-24374839)
chr4 (278-322)||(40348111-40348155)
chr4 (270-366)||(40495128-40495224)
chr4 (270-310)||(47785779-47785819)
[»] chr3 (24 HSPs)
chr3 (270-555)||(48506470-48506755)
chr3 (216-271)||(48764472-48764527)
chr3 (270-322)||(48507000-48507052)
chr3 (206-269)||(11203206-11203269)
chr3 (271-334)||(31975342-31975405)
chr3 (216-271)||(37988221-37988276)
chr3 (270-366)||(37988142-37988238)
chr3 (216-270)||(21727533-21727587)
chr3 (216-269)||(27082771-27082824)
chr3 (213-269)||(11652285-11652341)
chr3 (223-271)||(14871155-14871203)
chr3 (270-362)||(31114974-31115066)
chr3 (219-271)||(48507035-48507087)
chr3 (216-271)||(22925435-22925490)
chr3 (293-368)||(43018183-43018258)
chr3 (216-270)||(17603965-17604019)
chr3 (216-270)||(48648198-48648252)
chr3 (216-269)||(13477052-13477105)
chr3 (216-269)||(20212975-20213028)
chr3 (270-307)||(52266436-52266473)
chr3 (227-271)||(981673-981717)
chr3 (270-339)||(31115548-31115619)
chr3 (223-271)||(37520564-37520612)
chr3 (216-268)||(52605489-52605541)
[»] chr8 (16 HSPs)
chr8 (271-418)||(45411-45558)
chr8 (471-552)||(45558-45639)
chr8 (270-322)||(45887-45939)
chr8 (216-271)||(31642089-31642144)
chr8 (216-270)||(3165125-3165179)
chr8 (219-269)||(17725658-17725708)
chr8 (216-269)||(27442145-27442198)
chr8 (216-269)||(39779845-39779898)
chr8 (216-271)||(41974635-41974690)
chr8 (216-270)||(27441461-27441515)
chr8 (270-331)||(31602049-31602111)
chr8 (223-269)||(39778920-39778966)
chr8 (316-361)||(3290879-3290924)
chr8 (216-269)||(9197090-9197143)
chr8 (270-339)||(34478884-34478953)
chr8 (217-269)||(26652289-26652341)
[»] scaffold0086 (1 HSPs)
scaffold0086 (270-374)||(7582-7686)
[»] chr6 (11 HSPs)
chr6 (216-271)||(19323769-19323824)
chr6 (219-271)||(9441234-9441286)
chr6 (224-271)||(3623177-3623224)
chr6 (224-271)||(8488471-8488518)
chr6 (216-271)||(10171270-10171325)
chr6 (219-268)||(1366965-1367014)
chr6 (223-268)||(20833972-20834017)
chr6 (216-268)||(2512432-2512484)
chr6 (216-268)||(9441985-9442037)
chr6 (216-268)||(9442066-9442118)
chr6 (223-271)||(26529515-26529563)
[»] chr2 (15 HSPs)
chr2 (216-271)||(38361062-38361117)
chr2 (216-270)||(9540326-9540380)
chr2 (216-271)||(9276332-9276387)
chr2 (224-271)||(18174672-18174719)
chr2 (216-271)||(29719441-29719496)
chr2 (216-269)||(18820427-18820480)
chr2 (216-269)||(22301189-22301242)
chr2 (223-271)||(1296381-1296429)
chr2 (223-271)||(22560570-22560618)
chr2 (216-268)||(27177907-27177959)
chr2 (224-271)||(11750260-11750307)
chr2 (219-270)||(29513150-29513201)
chr2 (224-270)||(22301873-22301919)
chr2 (216-258)||(26752022-26752064)
chr2 (219-271)||(24933834-24933886)
[»] chr1 (16 HSPs)
chr1 (216-271)||(7559202-7559257)
chr1 (299-366)||(49452275-49452342)
chr1 (216-269)||(19172580-19172633)
chr1 (216-269)||(24991964-24992017)
chr1 (218-271)||(34309233-34309286)
chr1 (224-269)||(36390372-36390417)
chr1 (216-268)||(27256718-27256770)
chr1 (219-271)||(49681676-49681728)
chr1 (216-271)||(8987784-8987839)
chr1 (224-271)||(13262835-13262882)
chr1 (216-271)||(25468504-25468559)
chr1 (224-270)||(47967864-47967910)
chr1 (219-268)||(17171928-17171977)
chr1 (219-268)||(34308470-34308519)
chr1 (216-268)||(37853141-37853193)
chr1 (216-260)||(46391880-46391924)
[»] chr7 (27 HSPs)
chr7 (216-269)||(15305245-15305298)
chr7 (216-271)||(30661458-30661513)
chr7 (216-270)||(13785597-13785651)
chr7 (216-270)||(23901098-23901152)
chr7 (217-270)||(1417603-1417656)
chr7 (217-270)||(47719708-47719761)
chr7 (216-268)||(19068401-19068453)
chr7 (223-271)||(21496986-21497034)
chr7 (219-271)||(37949602-37949654)
chr7 (224-271)||(27948448-27948495)
chr7 (271-366)||(36379711-36379806)
chr7 (219-270)||(38225979-38226030)
chr7 (271-339)||(39803499-39803569)
chr7 (216-271)||(46428181-46428236)
chr7 (217-271)||(25599017-25599071)
chr7 (223-269)||(45099139-45099185)
chr7 (224-269)||(3029203-3029248)
chr7 (286-367)||(3771832-3771913)
chr7 (223-268)||(3903345-3903390)
chr7 (216-269)||(38225294-38225347)
chr7 (224-269)||(48718196-48718241)
chr7 (223-271)||(7668483-7668531)
chr7 (223-271)||(18977772-18977820)
chr7 (223-271)||(26636104-26636152)
chr7 (216-268)||(45099899-45099951)
chr7 (270-310)||(46428219-46428259)
chr7 (223-271)||(46428820-46428868)
[»] chr5 (16 HSPs)
chr5 (224-271)||(17071226-17071273)
chr5 (224-271)||(34600263-34600310)
chr5 (216-270)||(1281830-1281884)
chr5 (219-271)||(6476793-6476845)
chr5 (216-268)||(19360481-19360533)
chr5 (224-271)||(235594-235641)
chr5 (219-270)||(1554086-1554137)
chr5 (216-271)||(27364489-27364544)
chr5 (216-270)||(7632089-7632143)
chr5 (216-270)||(19128764-19128818)
chr5 (216-265)||(10554516-10554565)
chr5 (223-268)||(14478922-14478967)
chr5 (216-268)||(237826-237878)
chr5 (223-271)||(4084881-4084929)
chr5 (216-268)||(19359698-19359750)
chr5 (223-271)||(29046030-29046078)
[»] scaffold2007 (1 HSPs)
scaffold2007 (216-271)||(745-800)
[»] scaffold0176 (1 HSPs)
scaffold0176 (216-269)||(26586-26639)
[»] scaffold0085 (1 HSPs)
scaffold0085 (219-268)||(22076-22125)


Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 555
Target Start/End: Complemental strand, 56263343 - 56262808
Alignment:
Q  18 catattggagaagttcatgtgccttccgagttcgaattgctctaaacctcaaaggtctcaagtatgagtacaaagcagttgatctttttaagggagaaca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  56263343 catattggagaagttcatgtgccttccgagttcgaattgctctaaacctcaaaggtctcaagtacgagtacaaagcagttgatctttttaagggagaaca 56263244  T
Q  118 atatcatcctggttcgttcctctcttttttccttatcctttatactattatcaattacatacaactctgtatgtttaattaatcttttttattattatta 217  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||    
T  56263243 atatcatcctggttcgttcctctcttttttccttaccctttatactattatcaattacatacaaccctctatgcttaattaatcttttttattattatta 56263144  T
Q  218 t---------------gagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctcgttgacaccaaatatcaaccgtctatatttt 302  Q
    |               |||||||| |||||||||| |||||||||||||||||||| | ||||||||||                |||||||||||||||    
T  56263143 ttattattattattatgagacaggttccattgacaccaggtgtcaacgaatccgtttacaccaaatctc----------------aaccgtctatatttt 56263060  T
Q  303 taatccaattgtccataattgtttgttaaatttactcacctggtcttttctcacttgattcccactcgttttaattctgccaagaacgaagggatgtgta 402  Q
    ||||||||  || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56263059 taatccaaa-gttcataattgtttgttaaatctactcacctggtcttttctcacttgattcccactcgttttaattctgccaagaacgaagggatgtgta 56262961  T
Q  403 ttgtactcctcaccgatctcaatcaataatcacaacaaaatttcttctgtaaggagaatcggcagcaaaactattcaatcgtggatttatggttaaacat 502  Q
    || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  56262960 ttctactcctcaccgatctcaatcaacaatcacaacaaaatttcttctgtaaggagaatcggcagcaaaactattcaatcatggatttatggttaaacat 56262861  T
Q  503 ataaaattccagcaaactcatccaatccaaattattcctatatcactatcttc 555  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  56262860 ataaaattccagcaaactcatccaatccaaattattcttatatcactatcttc 56262808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 205 - 555
Target Start/End: Original strand, 40347538 - 40347872
Alignment:
Q  205 tttattattattatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctcgttgacaccaaatatcaaccgtctatattttta 304  Q
    |||||| ||||| |||||||||||||||||||| |||||||||||||||||||| | ||||||||||                |||| ||||||||||||    
T  40347538 tttatttttattttgagacaggatccattgacaccaggtgtcaacgaatccgtttacaccaaatctc----------------aaccatctatattttta 40347621  T
Q  305 atccaattgtccataattgtttgttaaatttactcacctggtcttttctcacttgattcccactcgttttaattctgccaagaacgaagggatgtgtatt 404  Q
    ||||||  || ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40347622 atccaaaggttcataattgtttgttaaatttactcacctgatcttttctcacttgattcccactcattttaattctgccaagaacgaagggatgtgtatt 40347721  T
Q  405 gtactcctcaccgatctcaatcaataatcacaacaaaatttcttctgtaaggagaatcggcagcaaaactattcaatcgtggatttatggttaaacatat 504  Q
     ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40347722 ctactcctcaccgatctcaatcaacaatcacaacaaaatttcttctgtaaggagaatcggcagcaaaactattcaatcgtggatttatggttaaacatat 40347821  T
Q  505 aaaattccagcaaactcatccaatccaaattattcctatatcactatcttc 555  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  40347822 aaaattccagcaaactcatccaatccaaattattcttatatcactatcttc 40347872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 56253787 - 56253889
Alignment:
Q  20 tattggagaagttcatgtgccttccgagttcgaattgctctaaacctcaaaggtctcaagtatgagtacaaagcagttgatctttttaagggagaacaat 119  Q
    |||||||||||||||||| ||||||||||||| || ||||| |||||||||         ||||| |||||||||||| |||| || |||||||||||||    
T  56253787 tattggagaagttcatgttccttccgagttcggatcgctctcaacctcaaa---------tatgattacaaagcagttaatctgttgaagggagaacaat 56253877  T
Q  120 atcatcctggtt 131  Q
     |||||||||||    
T  56253878 ctcatcctggtt 56253889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 7842580 - 7842532
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  7842580 caggatccattgacatcaggtgtcaacgaattcgttgacaccaaatctc 7842532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 322
Target Start/End: Original strand, 56262511 - 56262563
Alignment:
Q  270 tcgttgacaccaaatatcaaccgtctatatttttaatccaattgtccataatt 322  Q
    ||||||||||||||| |||||||||||||||||||||||||  ||||||||||    
T  56262511 tcgttgacaccaaatctcaaccgtctatatttttaatccaaaggtccataatt 56262563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 56265492 - 56265553
Alignment:
Q  70 aggtctcaagtatgagtacaaagcagttgatctttttaagggagaacaatatcatcctggtt 131  Q
    ||||||||| ||||| |||||||||||| |||| || ||||||||||||| |||||||||||    
T  56265492 aggtctcaaatatgattacaaagcagttaatctgttgaagggagaacaatctcatcctggtt 56265553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 20774238 - 20774183
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||| ||||||||||||||| |||||||||||| || |||||| ||||||||||    
T  20774238 tatgagtcaggatccattgacaccaggtgtcaacggattcgttgacaccaaatctc 20774183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 44792694 - 44792641
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatc 269  Q
    |||||| ||||||||||||||| ||||||||||||||| |||| | ||||||||    
T  44792694 tatgagtcaggatccattgacaccaggtgtcaacgaattcgttaacaccaaatc 44792641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 218 - 271
Target Start/End: Complemental strand, 53148667 - 53148614
Alignment:
Q  218 tgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||| |||||||||||||||||||||||||||  || |||||| ||||||||||    
T  53148667 tgagtcaggatccattgacatcaggtgtcaacagattcgttgacaccaaatctc 53148614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 30573760 - 30573712
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    ||||||||||||||| |||||||||||| || |||||| ||||||||||    
T  30573760 caggatccattgacaccaggtgtcaacggattcgttgacaccaaatctc 30573712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 56262476 - 56262528
Alignment:
Q  219 gagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||||||||| |||||| |||||||||| |||| |||||| ||||||||||    
T  56262476 gagacaggatccgttgacaccaggtgtcaatgaattcgttgacaccaaatctc 56262528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 7841539 - 7841594
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||| |||||||| |||||||||||||| |||| || |||||| ||||||||||    
T  7841539 tatgagtcaggatccgttgacatcaggtgttaacggattcgttgacaccaaatctc 7841594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 26147082 - 26147035
Alignment:
Q  224 aggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    ||||||| |||||| ||||||||||||||| |||||| ||||||||||    
T  26147082 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctc 26147035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 53732430 - 53732485
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    ||||||||||||||| |||||| |||||||||||| || |||||| || |||||||    
T  53732430 tatgagacaggatccgttgacaccaggtgtcaacggattcgttgacactaaatctc 53732485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 24551981 - 24551927
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatct 270  Q
    ||||||| |||||||||||||| |||||||||||| ||  ||||| |||||||||    
T  24551981 tatgagataggatccattgacaccaggtgtcaacggatttgttgacaccaaatct 24551927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 53773636 - 53773590
Alignment:
Q  224 aggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatct 270  Q
    ||||||| ||||||||||||||||||| || |||||| |||||||||    
T  53773636 aggatccgttgacatcaggtgtcaacggattcgttgacaccaaatct 53773590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 55976161 - 55976215
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatct 270  Q
    |||||||||| |||| |||||| |||||||||||| || |||||| |||||||||    
T  55976161 tatgagacagaatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 55976215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 19080380 - 19080432
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaat 268  Q
    ||||||||||||||  |||||| |||||||||||| || |||||| |||||||    
T  19080380 tatgagacaggatctgttgacaccaggtgtcaacggattcgttgacaccaaat 19080432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 24158876 - 24158824
Alignment:
Q  218 tgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatct 270  Q
    |||| ||||||||||||||| |||||||||||  || |||||| |||||||||    
T  24158876 tgagtcaggatccattgacaccaggtgtcaacagattcgttgacaccaaatct 24158824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 24374791 - 24374839
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||||| |||||| ||| ||||||||||| |||||| ||||||||||    
T  24374791 caggatccgttgacaccagctgtcaacgaattcgttgacaccaaatctc 24374839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 278 - 322
Target Start/End: Complemental strand, 40348155 - 40348111
Alignment:
Q  278 accaaatatcaaccgtctatatttttaatccaattgtccataatt 322  Q
    ||||||| |||||||| ||||||||||||||||  ||||||||||    
T  40348155 accaaatctcaaccgtttatatttttaatccaaaggtccataatt 40348111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 270 - 366
Target Start/End: Original strand, 40495128 - 40495224
Alignment:
Q  270 tcgttgacaccaaatatcaaccgtctatatttttaatccaattgtccataattgtttgttaaatttactcacctggtcttttctcacttgattccca 366  Q
    ||||||||||||||  ||| || |  |||||||||||| ||  || |||||||||||||| |||| | | | ||| || ||||||||||||||||||    
T  40495128 tcgttgacaccaaacctcagccattaatatttttaatctaaaggttcataattgtttgttgaattgattaagctgctcctttctcacttgattccca 40495224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 47785819 - 47785779
Alignment:
Q  270 tcgttgacaccaaatatcaaccgtctatatttttaatccaa 310  Q
    ||||||||||||||| |||||| ||||||| ||||||||||    
T  47785819 tcgttgacaccaaatctcaaccatctatatatttaatccaa 47785779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 250; Significance: 1e-138; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 270 - 555
Target Start/End: Original strand, 48506470 - 48506755
Alignment:
Q  270 tcgttgacaccaaatatcaaccgtctatatttttaatccaattgtccataattgtttgttaaatttactcacctggtcttttctcacttgattcccactc 369  Q
    ||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  48506470 tcgttgacaccaaatctcaaccgtctatatttttaatccaaaggtccataattgtttgttaaatttactcacctggtattttctcacttgattcccactc 48506569  T
Q  370 gttttaattctgccaagaacgaagggatgtgtattgtactcctcaccgatctcaatcaataatcacaacaaaatttcttctgtaaggagaatcggcagca 469  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48506570 gttttaattctgccaagaacgaagggatgtgtattctactcctcaccgatctcaatcaacaatcacaacaaaatttcttctgtaaggagaatcggcagca 48506669  T
Q  470 aaactattcaatcgtggatttatggttaaacatataaaattccagcaaactcatccaatccaaattattcctatatcactatcttc 555  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  48506670 aaactattcaatcattgatttatggttaaacatataaaattccagcaaactcatccaatccaaattattcttatatcactatcttc 48506755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 48764472 - 48764527
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  48764472 tatgagtcaggatccattgacatcaggtgtcaacgaattcgttgacaccaaatctc 48764527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 322
Target Start/End: Complemental strand, 48507052 - 48507000
Alignment:
Q  270 tcgttgacaccaaatatcaaccgtctatatttttaatccaattgtccataatt 322  Q
    ||||||||||||||| |||||||||||||||||||||||||  ||||||||||    
T  48507052 tcgttgacaccaaatctcaaccgtctatatttttaatccaaaggtccataatt 48507000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 269
Target Start/End: Complemental strand, 11203269 - 11203206
Alignment:
Q  206 ttattattattatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatc 269  Q
    |||||||||||||||| ||| |||| |||||| ||||||||||| ||| |||||||||||||||    
T  11203269 ttattattattatgagtcagaatccgttgacaccaggtgtcaacaaattcgttgaaaccaaatc 11203206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 334
Target Start/End: Complemental strand, 31975405 - 31975342
Alignment:
Q  271 cgttgacaccaaatatcaaccgtctatatttttaatccaattgtccataattgtttgttaaatt 334  Q
    |||||||||||||| |||||| || |||||||||||||||   |||||||||||||||||||||    
T  31975405 cgttgacaccaaatctcaaccatccatatttttaatccaaaaatccataattgtttgttaaatt 31975342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 37988276 - 37988221
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||| ||||||||||||||| ||||||||||||||| |||||| ||||||||||    
T  37988276 tatgagtcaggatccattgacaccaggtgtcaacgaattcgttgacaccaaatctc 37988221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 366
Target Start/End: Complemental strand, 37988238 - 37988142
Alignment:
Q  270 tcgttgacaccaaatatcaaccgtctatatttttaatccaattgtccataattgtttgttaaatttactcacctggtcttttctcacttgattccca 366  Q
    ||||||||||||||| ||| || |  |||||||||||| ||  || |||||||||||||| |||| ||| | ||| || ||||||||||||||||||    
T  37988238 tcgttgacaccaaatctcagccattaatatttttaatctaaaggttcataattgtttgttgaattgactaagctgctcctttctcacttgattccca 37988142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 21727587 - 21727533
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatct 270  Q
    ||||||||||||||| |||||| |||||||||||| || |||||| |||||||||    
T  21727587 tatgagacaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 21727533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 27082771 - 27082824
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatc 269  Q
    |||||| |||||||||||||||  |||||||||||||| |||||| ||||||||    
T  27082771 tatgagtcaggatccattgacactaggtgtcaacgaattcgttgacaccaaatc 27082824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 269
Target Start/End: Original strand, 11652285 - 11652341
Alignment:
Q  213 tattatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatc 269  Q
    |||||||||| | |||||||| |||||||||||||||| || |||||| ||||||||    
T  11652285 tattatgagatatgatccattaacatcaggtgtcaacggattcgttgacaccaaatc 11652341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 14871155 - 14871203
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||||| |||||| ||||||||||||||| |||||| ||||||||||    
T  14871155 caggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctc 14871203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 362
Target Start/End: Original strand, 31114974 - 31115066
Alignment:
Q  270 tcgttgacaccaaatatcaaccgtctatatttttaatccaattgtccataattgtttgttaaatttactcacctggtcttttctcacttgatt 362  Q
    ||||||| ||||||| |||||||| ||  ||||||||||||  | ||  |||||||||||||| ||| |||||||| || || ||||||||||    
T  31114974 tcgttgataccaaatctcaaccgtttacttttttaatccaaagggccgcaattgtttgttaaaattattcacctgggctattttcacttgatt 31115066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 48507087 - 48507035
Alignment:
Q  219 gagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||||||||| |||||| |||||||||| |||| |||||| ||||||||||    
T  48507087 gagacaggatccgttgacaccaggtgtcaatgaattcgttgacaccaaatctc 48507035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 22925490 - 22925435
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    ||||||||||||| | |||| |||||||||||||| ||| ||||| ||||||||||    
T  22925490 tatgagacaggattcgttgaaatcaggtgtcaacggatctgttgacaccaaatctc 22925435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 368
Target Start/End: Complemental strand, 43018258 - 43018183
Alignment:
Q  293 tctatatttttaatccaattgtccataattgtttgttaaatttactcacctggtcttttctcacttgattcccact 368  Q
    ||||| ||||||||| ||  |||||||||||||||||||||||||| | ||| || | |||| |||||||| ||||    
T  43018258 tctatttttttaatctaaaggtccataattgtttgttaaatttacttaactgctcatgtctctcttgattctcact 43018183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 17604019 - 17603965
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatct 270  Q
    ||||||| |||||||| ||||| |||||||||||| || |||||| |||||||||    
T  17604019 tatgagataggatccaatgacaccaggtgtcaacggattcgttgacaccaaatct 17603965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 48648198 - 48648252
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatct 270  Q
    |||||| |||||||| |||||| |||||||||||| || |||||| |||||||||    
T  48648198 tatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 48648252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 13477052 - 13477105
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatc 269  Q
    |||||| |||||||| |||||| ||||||||||||||| | |||| ||||||||    
T  13477052 tatgagtcaggatccgttgacaccaggtgtcaacgaattcattgacaccaaatc 13477105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 20212975 - 20213028
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatc 269  Q
    |||||| ||| |||| |||||| ||||||||||||||| |||||| ||||||||    
T  20212975 tatgagtcagaatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 20213028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 307
Target Start/End: Complemental strand, 52266473 - 52266436
Alignment:
Q  270 tcgttgacaccaaatatcaaccgtctatatttttaatc 307  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  52266473 tcgttgacaccaaatctcaaccgtctatttttttaatc 52266436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 981673 - 981717
Alignment:
Q  227 atccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||| |||||| ||||||||||||||| |||||| ||||||||||    
T  981673 atccgttgacaccaggtgtcaacgaattcgttgacaccaaatctc 981717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 270 - 339
Target Start/End: Complemental strand, 31115619 - 31115548
Alignment:
Q  270 tcgttgacaccaaatatcaaccgtcta--tatttttaatccaattgtccataattgtttgttaaatttactc 339  Q
    ||||||||||||||| |||| ||| ||  | ||||||||||||  | ||| |||||||||||||||||||||    
T  31115619 tcgttgacaccaaatctcaatcgtttacttttttttaatccaaaggaccacaattgtttgttaaatttactc 31115548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 37520612 - 37520564
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||||| |||| | ||||||||||||||| |||||| ||||||||||    
T  37520612 caggatccgttgataccaggtgtcaacgaattcgttgacaccaaatctc 37520564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 52605541 - 52605489
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaat 268  Q
    |||||| |||||||| |||||| ||||||||||||||| || ||| |||||||    
T  52605541 tatgagtcaggatccgttgacaccaggtgtcaacgaattcgatgataccaaat 52605489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 2e-63; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 271 - 418
Target Start/End: Original strand, 45411 - 45558
Alignment:
Q  271 cgttgacaccaaatatcaaccgtctatatttttaatccaattgtccataattgtttgttaaatttactcacctggtcttttctcacttgattcccactcg 370  Q
    |||||||||||||| |||||||||||||||||||||||||   |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  45411 cgttgacaccaaatctcaaccgtctatatttttaatccaaagttccataattgtttgttaaatttactcacgtggtcttttctcacttgattcccactcg 45510  T
Q  371 ttttaattctgccaagaacgaagggatgtgtattgtactcctcaccga 418  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  45511 ttttaattctgccaagaacgaagggatgtgtattctactcctcaccga 45558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 471 - 552
Target Start/End: Original strand, 45558 - 45639
Alignment:
Q  471 aactattcaatcgtggatttatggttaaacatataaaattccagcaaactcatccaatccaaattattcctatatcactatc 552  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  45558 aactattcaatcatggatttatggttaaacatataaaattccagcaaactcatccaatccaaattattcttatatcattatc 45639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 270 - 322
Target Start/End: Complemental strand, 45939 - 45887
Alignment:
Q  270 tcgttgacaccaaatatcaaccgtctatatttttaatccaattgtccataatt 322  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  45939 tcgttgacaccaaatatcaaccgtctatatttttaatccaaaggtccataatt 45887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 31642144 - 31642089
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||| ||||||||||||||| ||| ||||||||||| |||||| ||||||||||    
T  31642144 tatgagtcaggatccattgacaccagatgtcaacgaattcgttgacaccaaatctc 31642089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 3165179 - 3165125
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatct 270  Q
    |||||| |||||||| ||||||||||||||||||| || |||||| |||||||||    
T  3165179 tatgagtcaggatccgttgacatcaggtgtcaacggattcgttgacaccaaatct 3165125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 17725708 - 17725658
Alignment:
Q  219 gagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatc 269  Q
    |||||||||||| |||||| ||||||||||||||| |||||| ||||||||    
T  17725708 gagacaggatccgttgacagcaggtgtcaacgaattcgttgacaccaaatc 17725658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 27442198 - 27442145
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatc 269  Q
    |||||| |||||||| |||||| |||||||||||||||||||| | ||||||||    
T  27442198 tatgagtcaggatccgttgacaccaggtgtcaacgaatccgttaacaccaaatc 27442145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 39779898 - 39779845
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatc 269  Q
    |||||| ||||||||||||||| ||||||||||||||| |||| | ||||||||    
T  39779898 tatgagtcaggatccattgacaccaggtgtcaacgaattcgttaacaccaaatc 39779845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 41974635 - 41974690
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||| |||||||| |||||| |||||||||||| || |||||| ||||||||||    
T  41974635 tatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctc 41974690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 27441461 - 27441515
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatct 270  Q
    ||||||| ||||||| |||||| ||||||||||||||| |||||| | |||||||    
T  27441461 tatgagataggatccgttgacaccaggtgtcaacgaattcgttgacatcaaatct 27441515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 270 - 331
Target Start/End: Original strand, 31602049 - 31602111
Alignment:
Q  270 tcgttgacaccaaatatcaaccgtct-atatttttaatccaattgtccataattgtttgttaa 331  Q
    ||||||||||||||| |||||||||| || | |||||||||||  ||||||||| ||||||||    
T  31602049 tcgttgacaccaaatctcaaccgtctaatttatttaatccaatgatccataattatttgttaa 31602111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 269
Target Start/End: Original strand, 39778920 - 39778966
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatc 269  Q
    ||||||||||||||| ||||||||||||||| |||| | ||||||||    
T  39778920 caggatccattgacaccaggtgtcaacgaattcgttaacaccaaatc 39778966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 361
Target Start/End: Original strand, 3290879 - 3290924
Alignment:
Q  316 cataattgtttgttaaatttactcacctggtcttttctcacttgat 361  Q
    |||||||||||||||| ||||||||  |||||||||||| ||||||    
T  3290879 cataattgtttgttaattttactcatatggtcttttctcccttgat 3290924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 9197090 - 9197143
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatc 269  Q
    |||||| ||| |||| |||||| ||||||||||||||| |||||| ||||||||    
T  9197090 tatgagtcagaatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 9197143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 339
Target Start/End: Original strand, 34478884 - 34478953
Alignment:
Q  270 tcgttgacaccaaatatcaaccgtctatatttttaatccaattgtccataattgtttgttaaatttactc 339  Q
    |||||||||| |||| |||||||| ||| |||||||||||||   ||||||||  ||||| |||||||||    
T  34478884 tcgttgacactaaatctcaaccgtttatttttttaatccaataacccataattacttgtttaatttactc 34478953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 26652289 - 26652341
Alignment:
Q  217 atgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatc 269  Q
    ||||| |||||||| |||||| ||||||||||||||| |||| | ||||||||    
T  26652289 atgagtcaggatccgttgacaccaggtgtcaacgaattcgttaacaccaaatc 26652341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 374
Target Start/End: Original strand, 7582 - 7686
Alignment:
Q  270 tcgttgacaccaaatatcaaccgtctatatttttaatccaattgtccataattgtttgttaaatttactcacctggtcttttctcacttgattcccactc 369  Q
    ||||||||||||||| ||||   ||||| ||||||||| ||  |  |||||||||||||||| ||||||||  |||||||||||| |||||| ||||| |    
T  7582 tcgttgacaccaaatctcaattatctatttttttaatctaaaggctcataattgtttgttaattttactcatatggtcttttctcccttgatccccaccc 7681  T
Q  370 gtttt 374  Q
    |||||    
T  7682 gtttt 7686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 19323824 - 19323769
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    ||||||||||||||| |||||| ||||||||||||||| |||||| ||||||||||    
T  19323824 tatgagacaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctc 19323769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 9441234 - 9441286
Alignment:
Q  219 gagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||||||| | |||||| |||||||||||| ||||||||| ||||||||||    
T  9441234 gagacaggattcgttgacaccaggtgtcaacggatccgttgacaccaaatctc 9441286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 3623177 - 3623224
Alignment:
Q  224 aggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    ||||||| |||||||||||||||||||||| | |||| ||||||||||    
T  3623177 aggatccgttgacatcaggtgtcaacgaattctttgacaccaaatctc 3623224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 8488471 - 8488518
Alignment:
Q  224 aggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||||||||||| |||||||||||| || |||||| ||||||||||    
T  8488471 aggatccattgacaccaggtgtcaacggattcgttgacaccaaatctc 8488518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 10171270 - 10171325
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||| |||||||| |||||| |||||||||||| || |||||| ||||||||||    
T  10171270 tatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctc 10171325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 1366965 - 1367014
Alignment:
Q  219 gagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaat 268  Q
    |||||||||||| ||||| ||||||||||||| || |||||| |||||||    
T  1366965 gagacaggatccgttgacttcaggtgtcaacggattcgttgacaccaaat 1367014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 20834017 - 20833972
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaatccgttgaaaccaaat 268  Q
    |||||||| |||||| ||||||| |||||||||||||| |||||||    
T  20834017 caggatccgttgacaccaggtgttaacgaatccgttgacaccaaat 20833972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 2512432 - 2512484
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaat 268  Q
    ||||||||||||||| |||||| | | ||||||||||| |||||| |||||||    
T  2512432 tatgagacaggatccgttgacacctgatgtcaacgaattcgttgacaccaaat 2512484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 9442037 - 9441985
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaat 268  Q
    |||||||||| |||| ||||||||||||||||||| || |||| | |||||||    
T  9442037 tatgagacagaatccgttgacatcaggtgtcaacggattcgttcacaccaaat 9441985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 9442118 - 9442066
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaat 268  Q
    |||||||||| |||| ||||||||||||||||||| || |||| | |||||||    
T  9442118 tatgagacagaatccgttgacatcaggtgtcaacggattcgttcacaccaaat 9442066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 26529563 - 26529515
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||||| |||||| |||||||||||| || |||||| ||||||||||    
T  26529563 caggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctc 26529515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 38361062 - 38361117
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    ||||||||||||| | |||||||||||||||||||||| |||||| ||||||||||    
T  38361062 tatgagacaggatacgttgacatcaggtgtcaacgaattcgttgacaccaaatctc 38361117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 9540326 - 9540380
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatct 270  Q
    ||||||||||||||| |||||| ||||||||||||||| |||||| |||||||||    
T  9540326 tatgagacaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatct 9540380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 9276387 - 9276332
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||| |||||||| |||||| ||||||||||||||| |||||| ||||||||||    
T  9276387 tatgagtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctc 9276332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 18174719 - 18174672
Alignment:
Q  224 aggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||||||    
T  18174719 aggatccgttgacatcaggtgtcaacgaattcgttgacaccaaatctc 18174672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 29719441 - 29719496
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    ||||||||||||||| |||||| |||||||||||| || |||||| ||||||||||    
T  29719441 tatgagacaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctc 29719496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 18820427 - 18820480
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatc 269  Q
    |||||| | |||||||||||||||||||||||||| || |||||| ||||||||    
T  18820427 tatgagtcgggatccattgacatcaggtgtcaacggattcgttgacaccaaatc 18820480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 22301189 - 22301242
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatc 269  Q
    |||||| |||||||| |||||| |||||||||||||||||||| | ||||||||    
T  22301189 tatgagtcaggatccgttgacaccaggtgtcaacgaatccgttaacaccaaatc 22301242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 1296381 - 1296429
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||||| |||||| ||||||||||||||| |||||| ||||||||||    
T  1296381 caggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctc 1296429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 22560618 - 22560570
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||||| ||||||||||||||||||| || |||||| ||||||||||    
T  22560618 caggatccgttgacatcaggtgtcaacggattcgttgacaccaaatctc 22560570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 27177907 - 27177959
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaat 268  Q
    ||||||| ||||||| |||||| ||||||||||||||| |||||| |||||||    
T  27177907 tatgagataggatccgttgacaccaggtgtcaacgaattcgttgacaccaaat 27177959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 11750260 - 11750307
Alignment:
Q  224 aggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||||||||||| |||||||||||| || |||||| ||||||||||    
T  11750260 aggatccattgacaccaggtgtcaacggattcgttgacaccaaatctc 11750307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 270
Target Start/End: Complemental strand, 29513201 - 29513150
Alignment:
Q  219 gagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatct 270  Q
    |||| |||||||||||||| |||||||||||| || |||||| |||||||||    
T  29513201 gagataggatccattgacaccaggtgtcaacggattcgttgacaccaaatct 29513150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 22301919 - 22301873
Alignment:
Q  224 aggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatct 270  Q
    ||||||| |||||| ||||||||||||||| |||||| |||||||||    
T  22301919 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatct 22301873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 26752022 - 26752064
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgtt 258  Q
    |||||| |||||||| |||||| ||||||||||||||||||||    
T  26752022 tatgagtcaggatccgttgacaccaggtgtcaacgaatccgtt 26752064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 24933834 - 24933886
Alignment:
Q  219 gagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||||||||| |||||| | ||||||||||||| | |||| ||||||||||    
T  24933834 gagacaggatccgttgacacctggtgtcaacgaattcattgacaccaaatctc 24933886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 7559257 - 7559202
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    ||||||||||||||| |||||| |||||||||||| ||||||||| ||||||||||    
T  7559257 tatgagacaggatccgttgacaccaggtgtcaacggatccgttgacaccaaatctc 7559202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 299 - 366
Target Start/End: Complemental strand, 49452342 - 49452275
Alignment:
Q  299 tttttaatccaattgtccataattgtttgttaaatttactcacctggtcttttctcacttgattccca 366  Q
    ||||||||| ||  ||||||||||||||||| |||||||| | ||| ||||||||||||||| |||||    
T  49452342 tttttaatctaaaggtccataattgtttgttgaatttactaagctgctcttttctcacttgaatccca 49452275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 19172633 - 19172580
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatc 269  Q
    |||||| ||||||||||||||| |||||||||||| || |||||| ||||||||    
T  19172633 tatgagtcaggatccattgacaccaggtgtcaacggattcgttgacaccaaatc 19172580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 24991964 - 24992017
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatc 269  Q
    ||||||| |||||||||||||| |||||||||||| || |||||| ||||||||    
T  24991964 tatgagataggatccattgacaccaggtgtcaacggattcgttgacaccaaatc 24992017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 218 - 271
Target Start/End: Complemental strand, 34309286 - 34309233
Alignment:
Q  218 tgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    ||||||||||||| |||||| |||||||||||| || |||||| ||||||||||    
T  34309286 tgagacaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctc 34309233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 36390417 - 36390372
Alignment:
Q  224 aggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatc 269  Q
    ||||||| |||||| |||||||||||||||||||||| ||||||||    
T  36390417 aggatccgttgacaccaggtgtcaacgaatccgttgacaccaaatc 36390372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 27256770 - 27256718
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaat 268  Q
    ||||||||||||||| |||||| |||||||||||| || |||||| |||||||    
T  27256770 tatgagacaggatccgttgacaccaggtgtcaacgtattcgttgacaccaaat 27256718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 49681728 - 49681676
Alignment:
Q  219 gagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||||||||| |||||| ||| | |||||||||||||||| ||||||||||    
T  49681728 gagacaggatccgttgacaccagatatcaacgaatccgttgacaccaaatctc 49681676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 8987784 - 8987839
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||| |||||||  ||||||||||||||||||| || |||||| ||||||||||    
T  8987784 tatgagtcaggatcggttgacatcaggtgtcaacggattcgttgacaccaaatctc 8987839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 13262835 - 13262882
Alignment:
Q  224 aggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    ||||||| |||||| ||||||||||||||| |||||| ||||||||||    
T  13262835 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctc 13262882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 25468504 - 25468559
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||| ||||||||||||||| |||||||||||| || | |||| ||||||||||    
T  25468504 tatgagtcaggatccattgacaccaggtgtcaacggattcattgacaccaaatctc 25468559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 224 - 270
Target Start/End: Original strand, 47967864 - 47967910
Alignment:
Q  224 aggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatct 270  Q
    |||||||||||||| |||||||||||| || |||||| |||||||||    
T  47967864 aggatccattgacaccaggtgtcaacggattcgttgacaccaaatct 47967910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 17171928 - 17171977
Alignment:
Q  219 gagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaat 268  Q
    |||| ||||||| |||||| ||||||||||||||| |||||| |||||||    
T  17171928 gagataggatccgttgacaccaggtgtcaacgaattcgttgacaccaaat 17171977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 34308470 - 34308519
Alignment:
Q  219 gagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaat 268  Q
    |||||||||||| |||||| |||||||||||| || |||||| |||||||    
T  34308470 gagacaggatccgttgacaccaggtgtcaacgtattcgttgacaccaaat 34308519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 37853193 - 37853141
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaat 268  Q
    |||||| |||||||| || |||||||||||||||| || |||||| |||||||    
T  37853193 tatgagtcaggatccgttaacatcaggtgtcaacggattcgttgacaccaaat 37853141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 46391924 - 46391880
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttga 260  Q
    ||||||||||||||| |||||| |||||||||||| || ||||||    
T  46391924 tatgagacaggatccgttgacaccaggtgtcaacggattcgttga 46391880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 15305298 - 15305245
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatc 269  Q
    |||||| |||||||||||||||||||||||||| |||| |||||| ||||||||    
T  15305298 tatgagtcaggatccattgacatcaggtgtcaatgaattcgttgacaccaaatc 15305245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 30661513 - 30661458
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    ||||||||||||||| |||||| |||||||||||| || |||||| ||||||||||    
T  30661513 tatgagacaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctc 30661458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 13785651 - 13785597
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatct 270  Q
    ||||||||||||||| |||||| |||||||||||| || |||||| |||||||||    
T  13785651 tatgagacaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 13785597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 23901152 - 23901098
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatct 270  Q
    ||||||| |||||||||||||| ||||||||||||||| |||||| || ||||||    
T  23901152 tatgagataggatccattgacaccaggtgtcaacgaattcgttgacactaaatct 23901098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 1417603 - 1417656
Alignment:
Q  217 atgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatct 270  Q
    |||||| ||||||| |||||| ||||||||||||||| |||||| |||||||||    
T  1417603 atgagataggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatct 1417656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 47719761 - 47719708
Alignment:
Q  217 atgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatct 270  Q
    |||||| |||||||||||||| |||||||||||| || |||||| |||||||||    
T  47719761 atgagataggatccattgacaccaggtgtcaacggattcgttgacaccaaatct 47719708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 19068453 - 19068401
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaat 268  Q
    ||||||||||||||| |||||| |||||||||||| || |||||| |||||||    
T  19068453 tatgagacaggatccgttgacaccaggtgtcaacgtattcgttgacaccaaat 19068401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 21497034 - 21496986
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||||| |||||| ||||||||||||||| |||||| ||||||||||    
T  21497034 caggatccgttgacaacaggtgtcaacgaattcgttgacaccaaatctc 21496986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 37949602 - 37949654
Alignment:
Q  219 gagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||||||||| |||||| |||||||||||| || |||||| ||||||||||    
T  37949602 gagacaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctc 37949654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 27948448 - 27948495
Alignment:
Q  224 aggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    ||||||| |||||| ||||||||||||||| |||||| ||||||||||    
T  27948448 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctc 27948495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 366
Target Start/End: Original strand, 36379711 - 36379806
Alignment:
Q  271 cgttgacaccaaatatcaaccgtctatatttttaatccaattgtccataattgtttgttaaatttactcacctggtcttttctcacttgattccca 366  Q
    |||||||||||||| ||| || |  |||||||||||| ||  || | |||||||||||| |||| ||| | ||| || ||||||||||||||||||    
T  36379711 cgttgacaccaaatctcagccattaatatttttaatctaaaggttcgtaattgtttgttgaattgactaagctgctcctttctcacttgattccca 36379806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 270
Target Start/End: Complemental strand, 38226030 - 38225979
Alignment:
Q  219 gagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatct 270  Q
    |||| ||||||| |||||| ||||||||||||||| |||||| |||||||||    
T  38226030 gagataggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatct 38225979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 339
Target Start/End: Complemental strand, 39803569 - 39803499
Alignment:
Q  271 cgttgacaccaaatatcaaccgtcta--tatttttaatccaattgtccataattgtttgttaaatttactc 339  Q
    |||||||||||||| |||||||| ||  | ||||||||||||  | ||| |||||||||||||||||||||    
T  39803569 cgttgacaccaaatctcaaccgtttacttttttttaatccaaaggaccacaattgtttgttaaatttactc 39803499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 46428181 - 46428236
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||| |||||||| |||||| |||||||||||| || |||||| ||||||||||    
T  46428181 tatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctc 46428236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 25599017 - 25599071
Alignment:
Q  217 atgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    ||||| |||||||| |||||| |||||||||||| || |||||| ||||||||||    
T  25599017 atgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctc 25599071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 269
Target Start/End: Original strand, 45099139 - 45099185
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatc 269  Q
    |||||||| |||||||||||||||||||||| |||| | ||||||||    
T  45099139 caggatccgttgacatcaggtgtcaacgaattcgttaacaccaaatc 45099185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 3029248 - 3029203
Alignment:
Q  224 aggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatc 269  Q
    ||||||| |||||| ||||||||||||||| |||||| ||||||||    
T  3029248 aggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 3029203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 367
Target Start/End: Original strand, 3771832 - 3771913
Alignment:
Q  286 tcaaccgtctatatttttaatccaattgtccataattgtttgttaaatttactcacctggtcttttctcacttgattcccac 367  Q
    |||||||||||| ||||||||| ||  |  ||||||| |||||||| ||||||||  || ||||||||| |||||| |||||    
T  3771832 tcaaccgtctatttttttaatctaaaggctcataattatttgttaattttactcatatgatcttttctcccttgatccccac 3771913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 3903390 - 3903345
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaatccgttgaaaccaaat 268  Q
    |||||||| |||||| |||||||||||| ||||||||| |||||||    
T  3903390 caggatccgttgacaccaggtgtcaacggatccgttgacaccaaat 3903345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 38225294 - 38225347
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatc 269  Q
    |||||| || ||||| |||||| |||||||||||||||||||| | ||||||||    
T  38225294 tatgagtcatgatccgttgacaccaggtgtcaacgaatccgttaacaccaaatc 38225347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 48718241 - 48718196
Alignment:
Q  224 aggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatc 269  Q
    |||||||||||||| |||||||||| | ||||||||| ||||||||    
T  48718241 aggatccattgacagcaggtgtcaatggatccgttgacaccaaatc 48718196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 7668483 - 7668531
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||||| |||||| |||||||||||| || |||||| ||||||||||    
T  7668483 caggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctc 7668531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 18977820 - 18977772
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    ||||||||||||||| |||||||||||| || |||| | ||||||||||    
T  18977820 caggatccattgacaccaggtgtcaacggattcgttaacaccaaatctc 18977772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 26636104 - 26636152
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||||| |||||| |||||||||||| || |||||| ||||||||||    
T  26636104 caggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctc 26636152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 45099951 - 45099899
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaat 268  Q
    |||||| |||||||| |||||| |||||||||||| || |||||| |||||||    
T  45099951 tatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 45099899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 270 - 310
Target Start/End: Original strand, 46428219 - 46428259
Alignment:
Q  270 tcgttgacaccaaatatcaaccgtctatatttttaatccaa 310  Q
    ||||||||||||||| |||||| ||||||| ||||||||||    
T  46428219 tcgttgacaccaaatctcaaccatctatatatttaatccaa 46428259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 46428868 - 46428820
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||||| |||||| ||||||||||||||| |||||| | ||||||||    
T  46428868 caggatccgttgacaccaggtgtcaacgaattcgttgacatcaaatctc 46428820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 17071226 - 17071273
Alignment:
Q  224 aggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||||||    
T  17071226 aggatccgttgacatcaggtgtcaacgaattcgttgacaccaaatctc 17071273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 34600263 - 34600310
Alignment:
Q  224 aggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||||||    
T  34600263 aggatccgttgacatcaggtgtcaacgaattcgttgacaccaaatctc 34600310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 1281830 - 1281884
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatct 270  Q
    ||||||| |||||||||||||| |||||||||||| || |||||| |||||||||    
T  1281830 tatgagataggatccattgacaccaggtgtcaacggattcgttgacaccaaatct 1281884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 6476845 - 6476793
Alignment:
Q  219 gagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||||||||| |||||| |||||||||||| || |||||| ||||||||||    
T  6476845 gagacaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctc 6476793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 19360533 - 19360481
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaat 268  Q
    |||||| |||||||| |||||| ||||||||||||||| |||||| |||||||    
T  19360533 tatgagtcaggatccgttgacaccaggtgtcaacgaattcgttgacaccaaat 19360481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 235594 - 235641
Alignment:
Q  224 aggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||||||||||| |||||||||||| || |||||| ||||||||||    
T  235594 aggatccattgacaccaggtgtcaacggattcgttgacaccaaatctc 235641  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 270
Target Start/End: Complemental strand, 1554137 - 1554086
Alignment:
Q  219 gagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatct 270  Q
    |||| ||||||| |||||| ||||||||||||||| |||||| |||||||||    
T  1554137 gagataggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatct 1554086  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 27364544 - 27364489
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    ||||||||||||||| |||||| |||||||||| | || |||||| ||||||||||    
T  27364544 tatgagacaggatccgttgacaccaggtgtcaatggattcgttgacaccaaatctc 27364489  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 7632089 - 7632143
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatct 270  Q
    ||||||| ||||||| |||||| |||||||||||| || |||||| |||||||||    
T  7632089 tatgagataggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 7632143  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 19128764 - 19128818
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatct 270  Q
    |||||| |||||||| |||||| |||||||||||| || |||||| |||||||||    
T  19128764 tatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 19128818  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 10554516 - 10554565
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaacca 265  Q
    ||||||||||||||| |||||| |||||||||||| || |||||| ||||    
T  10554516 tatgagacaggatccgttgacaccaggtgtcaacggattcgttgacacca 10554565  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 14478922 - 14478967
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaatccgttgaaaccaaat 268  Q
    |||||||| ||||||||||||||||||| || |||||| |||||||    
T  14478922 caggatccgttgacatcaggtgtcaacggattcgttgacaccaaat 14478967  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 237878 - 237826
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaat 268  Q
    |||||| |||||||| |||||| |||||||||||| || |||||| |||||||    
T  237878 tatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 237826  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 4084881 - 4084929
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||||| |||||| | ||||||||||||| |||||| ||||||||||    
T  4084881 caggatccgttgacacctggtgtcaacgaattcgttgacaccaaatctc 4084929  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 19359698 - 19359750
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaat 268  Q
    |||||| |||||||| |||||| |||||||||||| || |||||| |||||||    
T  19359698 tatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 19359750  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 29046030 - 29046078
Alignment:
Q  223 caggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||||| |||||| |||||||||||| || |||||| ||||||||||    
T  29046030 caggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctc 29046078  T

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Target: scaffold2007 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold2007
Description:

Target: scaffold2007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 745 - 800
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatctc 271  Q
    |||||| ||||||||||||||| ||||| |||||| || |||||| ||||||||||    
T  745 tatgagtcaggatccattgacaccaggtttcaacggattcgttgacaccaaatctc 800  T

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Target: scaffold0176 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 26586 - 26639
Alignment:
Q  216 tatgagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaatc 269  Q
    |||||| |||||||| |||||| |||||||||||| || |||||| ||||||||    
T  26586 tatgagtcaggatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 26639  T

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Target: scaffold0085 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 22125 - 22076
Alignment:
Q  219 gagacaggatccattgacatcaggtgtcaacgaatccgttgaaaccaaat 268  Q
    |||||||||||| |||||| |||||||||||| || |||||| |||||||    
T  22125 gagacaggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 22076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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