View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_high_9 (Length: 560)
Name: NF16638_high_9
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 15 - 546
Target Start/End: Original strand, 41703993 - 41704524
Alignment:
| Q |
15 |
tatatttgttgacttaacatctctatggtaaataggggtgtgtgcagaagaatgcaagtaagccaatgcttcagctgtttgaaaagcaatcttaagccnn |
114 |
Q |
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| T |
41703993 |
tatatttgttgacttaacatctctatggtaaataggggtgtgtgcagaagaatgcaagtaagccaatgcttcagctgtttgaaaagcaatcttaagcctt |
41704092 |
T |
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| Q |
115 |
nnnnnccagtcaagaaaatttggatatctaccatgaatatggtcatagagggtcccatttgagatatactcatagatcatcaaaggctgctcagattcca |
214 |
Q |
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| T |
41704093 |
tttttccagtcaagaaaatttggatatctaccatgaatatggtcatagagggtcccatttgagatatactcatagatcatcaaaggctgctcagattcca |
41704192 |
T |
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| Q |
215 |
cacagcaacctaagagtcttactaggttcttgtgattaacttgagaaagtattgaaacctcattaagcacttgttgtgtgcttttaaggttaccaactct |
314 |
Q |
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| T |
41704193 |
cacagcaacctaagagtcttactaggttcttgtgattaacttgagaaagtattgaaacctcattaagcacttgttgtgtgcttttaaggttaccaactct |
41704292 |
T |
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| Q |
315 |
agctttcttgacagctacaatagttccatcttgtagttcacctttgtaaacttccccaaagccaccacttcctaggatcctgtcttgtgaaaaacagttt |
414 |
Q |
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| T |
41704293 |
agctttcttgacagctacaatagttccatcttgtagttcacctttgtaaacttccccaaagccaccacttcctaggatcctgtcttgtgaaaaacagttt |
41704392 |
T |
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| Q |
415 |
gttgctttcttcaactctttcagttgaaacattttgtaaggtttctcccctccagtgcttgatttcagcacaatttctctttccttggcctgcttctccc |
514 |
Q |
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| T |
41704393 |
gttgctttcttcaactctttcagttgaaacattttgtaaggtttctcccctccagtgcttgatttcagcacaatttctctttccttggcctgcttctccc |
41704492 |
T |
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| Q |
515 |
tgtagttagagtgtttgaaggactttgtgatg |
546 |
Q |
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| T |
41704493 |
tgtagttagagtgtttgaaggactttgtgatg |
41704524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 468 - 520
Target Start/End: Original strand, 1440620 - 1440672
Alignment:
| Q |
468 |
agtgcttgatttcagcacaatttctctttccttggcctgcttctccctgtagt |
520 |
Q |
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| T |
1440620 |
agtgcttggtttcagcagaatttctctttctttggtctgctactcccggtagt |
1440672 |
T |
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