View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_low_11 (Length: 555)
Name: NF16638_low_11
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 15 - 537
Target Start/End: Complemental strand, 38360225 - 38359702
Alignment:
| Q |
15 |
gatgaattagcagatataagtgagttgttgccagaacgagaagcacctgagataaccatgttgacaacatatctgacattgattatcttagcattaaatc |
114 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38360225 |
gatgaattagcagatagaagtgagttgttgccagaacaagaagcacctgagataaccatgttgacaacatatctgacattgattatcttagcattaaatc |
38360126 |
T |
|
| Q |
115 |
ttctttggtttatgcaaaaccagttggtgttgaagaagtgaattatggcagatagagcaaccaatctacaatgcggggaccaatttctttcagctatcct |
214 |
Q |
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||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||| || |||||||||||||||| ||||||||| |
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| T |
38360125 |
ttctttggtttatgcaaaaccagatggtgttgaagcagtgaattatggcagatagagcaaccagtctacattgtggggaccaatttcttttagctatcct |
38360026 |
T |
|
| Q |
215 |
tatgatgtccaaaaaacatgaaaagtttcaggtgattttgagaatgtgaaacaaccagg-ccaaatgtcataagagaaagtgcattcaaggaacatgtga |
313 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
38360025 |
tatgatgtccaaaaaacttgaaaagtttcaggtgattttgagaatgtgaaacaaccaggaccaaatgtcataagagaaagtgcattcacggaacatgtga |
38359926 |
T |
|
| Q |
314 |
gattgagtttcttgatttttccacaaagagaacaaatagagggaagcaaacaacctcttttcgcaagaatgtcatatgtggggagcttgttgagaagaat |
413 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38359925 |
gattgagtttcttgatttttccacaaagagaaaaaatagagggaagcaaacaacctcttttcgcaagaatgtcatctgtggggagcttgttgagaagaat |
38359826 |
T |
|
| Q |
414 |
cctccaaacaagaagaggcttggaggggggcaatagtagcatgccaaatagtttcagcgcaactaatgttttgaggatgaggggaagtatgaaaacgata |
513 |
Q |
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||||||||||||||||||||||||||||| |||||| ||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38359825 |
cctccaaacaagaagaggcttggagggggacaatagcagcattacaaatagttttagcccaactaatgttttgaggatgaggggaagtatgaaaacgata |
38359726 |
T |
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| Q |
514 |
tgcatctttaaaggagagacttcc |
537 |
Q |
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|||||||||||||||||||||||| |
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| T |
38359725 |
tgcatctttaaaggagagacttcc |
38359702 |
T |
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