View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_low_12 (Length: 554)
Name: NF16638_low_12
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 505; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 10 - 534
Target Start/End: Original strand, 31603231 - 31603755
Alignment:
| Q |
10 |
gcacagacattattatttgatgttctaactctaaccaaaacagctcactgatagtttgaaaaactaaatcccaattcaactttaacatagccgcatcatt |
109 |
Q |
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| T |
31603231 |
gcacagacattattatttgatgttctaactctaaccaaaacagctcactgatagtttgaaaaactaaatcccaattcaactttaacatagccgcattatt |
31603330 |
T |
|
| Q |
110 |
aacggttttgaggaacaaagtccaagaccaccttcagagaaaggagtataaattgtgtcccaagcaacagtagatcagtctggagtggacatctcccgac |
209 |
Q |
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| T |
31603331 |
aacggttttgaggaacaaagtccaagaccaccttcagagaaaggagtataaattgtgtcccaagcaacagtagatcagtctggagtggacatctcccgac |
31603430 |
T |
|
| Q |
210 |
caaacaaagtttcgcagataatgatctagcaattcaatcaaagaaattgacctcacatttatttcaaaactaaaaataagcataccatgaatgacagact |
309 |
Q |
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| T |
31603431 |
caaacaaagtttcgcagataatgatctagcaattcaatcaaagaaattgacctcacatttatttcaaaactacaaataagcataccatgaatgacagact |
31603530 |
T |
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| Q |
310 |
tgactaactgaatccttcccattatggataaatgatagagtaccagcagtgaattcccagtgtattcgagaataagattttgatttatcaaagctaatca |
409 |
Q |
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| T |
31603531 |
tgactaactgaatccttcccattatggataaatgatagagtaccagcagtgaattcccagtgtattcgagaataagattttgatttgtcaaagctaatca |
31603630 |
T |
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| Q |
410 |
atttgccagagcattcgccatgccctcctataatggttcacaagctatatcaaacctcgtttacctttgcaaaaaatcatgatatcgtatacatattaga |
509 |
Q |
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| T |
31603631 |
atttgccagagcattcgccatgccctcctataatggttcacgggctatatcaaacctcgtttacctttgcaaaaaatcatgatatcgtatacatattaga |
31603730 |
T |
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| Q |
510 |
cgtgagtaggggtttggagtcccct |
534 |
Q |
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| T |
31603731 |
cgtgagtaggggtttggagtcccct |
31603755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 16 - 375
Target Start/End: Original strand, 31605693 - 31606064
Alignment:
| Q |
16 |
acattattatttgatgttctaactctaaccaaaacagctcactgatagtttgaaaaactaaatcccaattcaactttaacatagccgcatcattaacggt |
115 |
Q |
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||||||||||| | ||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||| || |||||| |
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| T |
31605693 |
acattattattggctgtcctaactctaaccaaagcagctcactgatagtttgaaaaactaactcccaattcaactttaacgtagccacattatcaacggt |
31605792 |
T |
|
| Q |
116 |
tttgaggaacaaagtccaagaccaccttcagagaaaggagtataaattgtgtcccaagcaacagt-agatcagtctggagtggacatctcccgaccaaac |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||| | ||||||||| ||||||| |
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| T |
31605793 |
tttgaggaacaaagtccaagaccaccttcagagaaaggagtataaattgtgtcccaagcaacagtgacatcaatctggaattgacatctcctgaccaaaa |
31605892 |
T |
|
| Q |
215 |
aaagtttcgcagataatgatctagcaattcaatcaaa--------gaaattgacctcacatttatttcaaaactaaaaataagcataccatgaatgacag |
306 |
Q |
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| |||| |||| |||||| | ||||||||||||||| ||||||| | ||||||||||| ||||||| |||||||||||||||||| ||||| |
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| T |
31605893 |
taggttttgcaggtaatgaaccagcaattcaatcaaagaaattgggaaattggctacacatttattttaaaactacaaataagcataccatgaa-gacag |
31605991 |
T |
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| Q |
307 |
acttgactaactgaatccttcccattatggataaatgat----agagtaccagcagtgaattcccagtgtatt |
375 |
Q |
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| T |
31605992 |
acttgactaatcgagtccttccagttatggataaatgatagggagagtaccggcagtaaattcccagtgtatt |
31606064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 378 - 449
Target Start/End: Original strand, 31606101 - 31606171
Alignment:
| Q |
378 |
agaataagattttgatttatcaaagctaatcaatttgccagagcattcgccatgccctcctataatggttca |
449 |
Q |
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|||||||||||||||||| |||||||||||||||| |||||||||||| ||||| ||||||| ||||||||| |
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| T |
31606101 |
agaataagattttgatttgtcaaagctaatcaattagccagagcattcaccatg-cctcctaaaatggttca |
31606171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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