View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16638_low_16 (Length: 537)
Name: NF16638_low_16
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 492; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 1 - 520
Target Start/End: Original strand, 3427166 - 3427685
Alignment:
| Q |
1 |
tgcatgccatttggagcgtcatagttccaaaatggtaaagcaaaggttggatcattgatcaagctacccaagattctttcatagaaataaagataccatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3427166 |
tgcatgccatttggagcgtcatagttccaaaatggtaaagcaaaggttggatcattgatcaagctacccaagattctttcatagaaataaagataccatc |
3427265 |
T |
|
| Q |
101 |
tatgaaaagggaaaaagagccaagaactatgaacttgaagatcaaggttagggaaaccaacttgggaatatgcaccatcacaataagcacaatgaatatt |
200 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
3427266 |
tatgaaaaggaaaaaagagccaagaattatgaacttgaagatcaagattagggaaaccaacttgggaatatgcaccatcacaataagcacaatggatgtt |
3427365 |
T |
|
| Q |
201 |
tgcttgttgtatgaaactacgtggatcactggaaggtaaggctttcatgagttcaatggcttttttgtacttttgtagatattcatcattgactaaatgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3427366 |
tgcttgttgtatgaaactacgtggatcattggatggtaaggctttcatgagttcaatggcttttttgtacttttgtagatattcatcattgactaaatgt |
3427465 |
T |
|
| Q |
301 |
gctgcttgtcttacccttaagggttgatttgatgaaggaattttgtaatttatgatttttgtggaatttggtggacaacaattaatattgtttggtgttg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3427466 |
gctgcttgtcttacccttaagggttgatttgatgaaggaattttgtaatttatgatttttgtggaatttggtggacaacaattaatattgtttggtgttg |
3427565 |
T |
|
| Q |
401 |
cacctaagggtagatccggtggaccacatgttgaaaggtcaggtggggatattggagaagctagggcaaaagggttagtggtgaaagtaccacaaagtcc |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3427566 |
cacctaagggtagatccggtggaccacatgttgaaaggtcaggtggggatattggagaagctagggcaaaagggttagtggtgaaagtaccacaaagtcc |
3427665 |
T |
|
| Q |
501 |
tccaaggccaattagaacat |
520 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
3427666 |
tccaaggccaattagaacat |
3427685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 520
Target Start/End: Original strand, 3433357 - 3433876
Alignment:
| Q |
1 |
tgcatgccatttggagcgtcatagttccaaaatggtaaagcaaaggttggatcattgatcaagctacccaagattctttcatagaaataaagataccatc |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3433357 |
tgcatgccattaggagcgtcatagttccaaaatggtaaagcaaaggttggatcattgatcaagctacccaagattctttcatagaaataaagataccatc |
3433456 |
T |
|
| Q |
101 |
tatgaaaagggaaaaagagccaagaactatgaacttgaagatcaaggttagggaaaccaacttgggaatatgcaccatcacaataagcacaatgaatatt |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || || |
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|
| T |
3433457 |
tatgaaaaggaaaaaagagccaagaactatgaacttgaagatcaagattaggaaaaccaacttgggaatatgcaccatcacaataagcacaatggatgtt |
3433556 |
T |
|
| Q |
201 |
tgcttgttgtatgaaactacgtggatcactggaaggtaaggctttcatgagttcaatggcttttttgtacttttgtagatattcatcattgactaaatgt |
300 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||| |
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|
| T |
3433557 |
tgcttgttgtatgaaattacgtggatcattggatggtaaggctttcatgagttcaatggcttttttgtatttttgtagatattcatcgttgaccaaatgt |
3433656 |
T |
|
| Q |
301 |
gctgcttgtcttacccttaagggttgatttgatgaaggaattttgtaatttatgatttttgtggaatttggtggacaacaattaatattgtttggtgttg |
400 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| | | ||||| | |
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|
| T |
3433657 |
gctgcttgtcttacccttaagggttgagttgatgaaggaaatttgtaatctatgatttttgtggaatttggtggacaacaattaagaccactgggtgtag |
3433756 |
T |
|
| Q |
401 |
cacctaagggtagatccggtggaccacatgttgaaaggtcaggtggggatattggagaagctagggcaaaagggttagtggtgaaagtaccacaaagtcc |
500 |
Q |
| |
|
||||| |||||||||| ||||| |||||||| |||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
3433757 |
cacctgagggtagatctggtggtccacatgtagaaaggtctggtgcggatattggagaagctagggcaaaagggttagcggtgaaagtaccacaaagtcc |
3433856 |
T |
|
| Q |
501 |
tccaaggccaattagaacat |
520 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
3433857 |
tccaaggccaactagaacat |
3433876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 2 - 520
Target Start/End: Complemental strand, 11897109 - 11896597
Alignment:
| Q |
2 |
gcatgccatttggagcgtcatagttccaaaatggtaaagcaaaggttggatcattgatcaagctacccaagattctttcatagaaataaagataccatct |
101 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| || |
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|
| T |
11897109 |
gcatgccattaggagcgtcatagttccaaaatggtaaagcaaaggttggatcattgatcaagctacctaagatcctttcatagaaataaaggtaccacct |
11897010 |
T |
|
| Q |
102 |
atgaaaagggaaaaagagccaagaactatgaacttgaagatcaaggttagggaaaccaacttgggaatatgcaccatcacaataagcacaatgaatattt |
201 |
Q |
| |
|
||||||||| |||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || | ||| |
|
|
| T |
11897009 |
atgaaaaggaaaaaagagccaagagccatgaacttgaagatcaaggttagggaagccaacttgggaatatgcaccatcacaataagcacagtggacgttt |
11896910 |
T |
|
| Q |
202 |
gcttgttgtatgaaactacgtggatcactggaaggtaaggctttcatgagttcaatggcttttttgtacttttgtagatattcatcattgactaaatgtg |
301 |
Q |
| |
|
|||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||| |
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|
| T |
11896909 |
gcttgttgcatgaaactacgtggatcattggatggtaaggctttcatgagttcaatggcttttttgtatttttgaagatattcatcgttgaccaaatgtg |
11896810 |
T |
|
| Q |
302 |
ctgcttgtcttacccttaagggttgatttgatgaaggaattttgtaatttatgatttttgtggaatttggtggacaacaattaatattgtttggtgttgc |
401 |
Q |
| |
|
|||||||||| ||||||||||||||| || ||| ||||| |||||||| ||||||||||||||| |||||||||||||||| ||||| |||| |
|
|
| T |
11896809 |
ctgcttgtctaacccttaagggttgagttaatggaggaaatttgtaatctatgatttttgtggattttggtggacaacaatcaatat------caattgc |
11896716 |
T |
|
| Q |
402 |
acctaagggtagatccggtggaccacatgttgaaaggtcaggtggggatattggagaagctagggcaaaagggttagtggtgaaagtaccacaaagtcct |
501 |
Q |
| |
|
|||| ||| || || | || | |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11896715 |
acctgaggatatatgtgatgacctacatttagaaaggtcaggtggggatattggagaagctagggcaaaagggttagtggtgaaagtaccacaaagtcct |
11896616 |
T |
|
| Q |
502 |
ccaaggccaattagaacat |
520 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
11896615 |
ccaaggccaattagaacat |
11896597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 11912443 - 11912048
Alignment:
| Q |
1 |
tgcatgccatttggagcgtcatagttccaaaatggtaaagcaaaggttggatcattgatcaagctacccaagattctttcatagaaataaagataccatc |
100 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||| ||||||||| ||||||| |
|
|
| T |
11912443 |
tgcatgccattaggagcgtcaaagttccaaaatggtaaagcaaaggctggatcattgatcaaactacccaagattctctcatggaaataaaggtaccatc |
11912344 |
T |
|
| Q |
101 |
tatgaaaagggaaaaagagccaagaactatgaacttgaagatcaaggttagggaaaccaacttgggaatatgcaccatcacaataagcacaatgaatatt |
200 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
11912343 |
tatgaaaaggaaaaaagagccaagagttatgaacttgaagatcaaggttagggaaaccaacttgggaatatgcaccatcacaataagcacaatggatgtt |
11912244 |
T |
|
| Q |
201 |
tgcttgttgtatgaaactacgtggatcactggaaggtaaggctttcatgagttcaatggcttttttgtacttttgtagatattcatcattgactaaatgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||| |||||| |||| ||||||||||| ||||| ||||| |||||||| ||||| || |||| | |
|
|
| T |
11912243 |
tgcttgttgtatgaaactacgtggatcattggatggtaatgctttcgtgagctcaatggctttcttgtatttttgaagatattcgtcattaaccaaattt |
11912144 |
T |
|
| Q |
301 |
gctgcttgtcttacccttaagggttgatttgatgaaggaattttgtaatttatgatttttgtggaatttggtggacaacaattaatattgtttggt |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11912143 |
gctgcttgtcttacccttaagggttgatttgatgaaggaattttgtaatctatgatttttgtggaatttggtggacaacaattaatattgtttggt |
11912048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 380 - 520
Target Start/End: Complemental strand, 11912037 - 11911897
Alignment:
| Q |
380 |
aattaatattgtttggtgttgcacctaagggtagatccggtggaccacatgttgaaaggtcaggtggggatattggagaagctagggcaaaagggttagt |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11912037 |
aattaatattgtttggtgttgcacctaagggtagatccggtggaccacatgtagaaaggtcaggtggggatattggagaagctagggcaaaagggttagt |
11911938 |
T |
|
| Q |
480 |
ggtgaaagtaccacaaagtcctccaaggccaattagaacat |
520 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11911937 |
ggtgaaagtaccacaaagtcctccaaggccaattagaacat |
11911897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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