View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_low_17 (Length: 531)
Name: NF16638_low_17
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 484; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 13 - 511
Target Start/End: Original strand, 31875532 - 31876028
Alignment:
| Q |
13 |
gcataggcatccaagtaatctctgaaggaggtttaatttgggaatgaagttattaccctccttgtccttctttcccactaaaacaatgacctaccacatt |
112 |
Q |
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| T |
31875532 |
gcataggcatccaagtaatctctgaaggaggtttaatttgggaatgaagttattaccctccttgtccttctttcccactaaaacaatgacctaccacatt |
31875631 |
T |
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| Q |
113 |
tttaatcaagcctttagatttaagctgggacaatatgctggtctcaccatgcccaagcccaagaatcccttttgagataggtttaggttttttatcagta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31875632 |
tttaatcaagcctttagatttaagctgggacaatatgctggtctcaccatgcccaagcccaagaatcccttttgagataggtttaggttttttatcagta |
31875731 |
T |
|
| Q |
213 |
accttcaaaatatttgtacacctgccatattaattgcagcacacaaactatagtcaaaataaaaaatatttcctccattctaaatataacacacatttgg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31875732 |
accttcaaaatatttgtacacctgccatattaattgcagcacacaaactatagtcaaaataaaaaatatttcctccattctaaatataacacacatttgg |
31875831 |
T |
|
| Q |
313 |
attaatgtatctggtccaaacttttgttgactaataatgtcttttatgtttaggaccagagcgagtagttaacacaaatctaaccaattaatcttaggtg |
412 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31875832 |
attaatgtatctggtccaaacttttgttgactaattatgtcttttatgtttaggaccagagcgagtagttaacacaaatctaaccaattaatcttaggtg |
31875931 |
T |
|
| Q |
413 |
actcacccgaatgccagcttaggacgctgtaaagtgcgatcagagctttctaagggaatgttgtcttgtactaggaaacccttagtttgaagaccgtct |
511 |
Q |
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| T |
31875932 |
act--cccgaatgccagcttaggacgctgtaaagtgcgatcagagctttctaagggaatgttgtcttgtactaggaaacccttagtttgaagaccgtct |
31876028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 96 - 183
Target Start/End: Complemental strand, 886731 - 886644
Alignment:
| Q |
96 |
caatgacctaccacatttttaatcaagcctttagatttaagctgggacaatatgctggtctcaccatgcccaagcccaagaatccctt |
183 |
Q |
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||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||| || ||||| |||||||||||| ||||||| |
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| T |
886731 |
caatgacctaccacattttgaatcaaaccttgagatttaagctgggacaatatgctggccttaccatacccaagcccaaggatccctt |
886644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 410 - 505
Target Start/End: Original strand, 31974199 - 31974298
Alignment:
| Q |
410 |
gtgactcacccgaatgccagcttaggacgctgtaaagtgcgatcagagctttctaagggaat---gt-tgtcttgtactaggaaacccttagtttgaaga |
505 |
Q |
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| T |
31974199 |
gtgaatcacccgaatgcgacctcagggcgctgtaaagtgcgatcagagctttcaatgggaatactgtctgtcttttactaggaaacctttagtttcaaga |
31974298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 165
Target Start/End: Original strand, 31935796 - 31935838
Alignment:
| Q |
123 |
cctttagatttaagctgggacaatatgctggtctcaccatgcc |
165 |
Q |
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| T |
31935796 |
cctttagatttaagctgggacaatatgctggcctcaccgtgcc |
31935838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 123 - 165
Target Start/End: Complemental strand, 31660556 - 31660514
Alignment:
| Q |
123 |
cctttagatttaagctgggacaatatgctggtctcaccatgcc |
165 |
Q |
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||||||||||||||||||||||||||| ||| |||||| |||| |
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| T |
31660556 |
cctttagatttaagctgggacaatatgttggcctcaccgtgcc |
31660514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 123 - 165
Target Start/End: Original strand, 31974033 - 31974075
Alignment:
| Q |
123 |
cctttagatttaagctgggacaatatgctggtctcaccatgcc |
165 |
Q |
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||||||||||||||||||||||||||| || ||||||| |||| |
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| T |
31974033 |
cctttagatttaagctgggacaatatgttgctctcaccgtgcc |
31974075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 442 - 478
Target Start/End: Original strand, 31935906 - 31935942
Alignment:
| Q |
442 |
taaagtgcgatcagagctttctaagggaatgttgtct |
478 |
Q |
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||||||||||||||||||||||| |||||| |||||| |
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| T |
31935906 |
taaagtgcgatcagagctttctatgggaatattgtct |
31935942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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