View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_low_18 (Length: 520)
Name: NF16638_low_18
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 461; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 18 - 502
Target Start/End: Original strand, 32646087 - 32646570
Alignment:
| Q |
18 |
tttttgtcattctcaaccaattggtatagcttagtgatttctgtccgtgccttctgaacataatcctcaaaccccagatcatggttccccttaagatatg |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32646087 |
tttttgtcattctcaaccaattggtatagcttagtgatttctgtccgtgccttctgaacataatcctcaaacctcagatcatggttccccttaagatatg |
32646186 |
T |
|
| Q |
118 |
cagatactaaaatcctatttttatccataacaaaatcctttttggacttctccaagaaatattgtttactaggatcactaagaaatttgatcattgcttc |
217 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32646187 |
cagatactaaaatcctattttta-ccataacaaaatcctttttggacttctccaagaaatattgtttactaggatcactaagaaatttgatcattgcttc |
32646285 |
T |
|
| Q |
218 |
aaagctatggttccattcagcatagcactgcattagatttttcacgcgataatcaagaaagatatcttcaagacccggacaactatccactttcattctc |
317 |
Q |
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|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32646286 |
aaagctatggttccattcagtatagcactgcatgagatttttcacgcgataatcaagaaagatatcttcaagacccggacaactatccactttcattctc |
32646385 |
T |
|
| Q |
318 |
ttaccattgccaaatagcacaatgtcacctaaaccatatgtatcatggtcaggtgaatctgtaactaaactatgcaaccgaattgccacctgcaaaattg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32646386 |
ttaccattgccaaatagcacaatgtcacctaaaccatatgtatcatggtcaggtgaatctgtaactaaactatgcaaccgaattgccacctgcaaaattg |
32646485 |
T |
|
| Q |
418 |
cagtattagttggagcacaggtcaatgttcttgatttcaacttgagtagagaaaaaagcaagcatgcgacagtctttgtttttcc |
502 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32646486 |
cagtattagttggagcacaggtcaatgttcttgatttcaacttgagtagagaaaaaagcaagcatgcaacagtctttgtttttcc |
32646570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 506
Target Start/End: Complemental strand, 32568313 - 32567804
Alignment:
| Q |
18 |
tttttgtcattctcaaccaattggtatagcttagtgatttctgtccgtgccttctgaacataatcctcaaacccca------gatcatggttccccttaa |
111 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| || || |||||||||||||| |
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| T |
32568313 |
tttttgtcattctcatccaattggtatagcttagtgatttctgtccgagccttctgaacataattctcaaacctcataattagaccatggttccccttat |
32568214 |
T |
|
| Q |
112 |
---------------gatatgcagatactaaaatcctatttttatccataacaaaatcctttttggacttctccaagaaatattgtttactaggatcact |
196 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
32568213 |
ttatcttgtatgcatgatatgcagatgctaaaatcctatttttatccataacaaaatcctttttggacatctccaagaaatattgtttgctaggatcact |
32568114 |
T |
|
| Q |
197 |
aagaaatttgatcattgcttcaaagctatggttccattcagcatagcactgcattagatttttcacgcgataatcaagaaagatatcttcaagacccgga |
296 |
Q |
| |
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|||||||| ||| |||||| | || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32568113 |
aagaaattcgataattgctaccaaactatggttccattcagcatagcactgcatgagatttttcacgcgataatcaagaaagatatcttcaagacctgga |
32568014 |
T |
|
| Q |
297 |
caactatccactttcattctcttaccattgccaaatagcacaatgtcacctaaaccatatgtatcatggtcaggtgaatctgtaactaaactatgcaacc |
396 |
Q |
| |
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||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
32568013 |
taactatccactttcattcttttcccattgccaaatagcacaatgtcacctaaaccatatgtatcatggtcaagtgaatctgtaactaaactatgcaaac |
32567914 |
T |
|
| Q |
397 |
gaattgccacctgcaaaattgcagtattagttggagcacaggtcaatgttcttgatttcaacttgagtagagaaaaaagcaagcatgcgacagtctttgt |
496 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32567913 |
gaattgccacctgcaaaattgcagtattagttggagcacaggtcaatgttcttgatttcaacttgagtagagaaaaaagcaagcatgcaacagtctttgt |
32567814 |
T |
|
| Q |
497 |
ttttcctgtc |
506 |
Q |
| |
|
|||||||||| |
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| T |
32567813 |
ttttcctgtc |
32567804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 309 - 506
Target Start/End: Original strand, 32532330 - 32532527
Alignment:
| Q |
309 |
ttcattctcttaccattgccaaatagcacaatgtcacctaaaccatatgtatcatggtcaggtgaatctgtaactaaactatgcaaccgaattgccacct |
408 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| |||| |||||||||||| ||| ||||||| ||||||| |||| ||||||| ||||||||| |
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| T |
32532330 |
ttcatcctcttgccattgccaaatagcacaatgtcacccaaactatatgtatcatgctcaagtgaatccataactaacctattcaaccgacttgccacct |
32532429 |
T |
|
| Q |
409 |
gcaaaattgcagtattagttggagcacaggtcaatgttcttgatttcaacttgagtagagaaaaaagcaagcatgcgacagtctttgtttttcctgtc |
506 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||| | || ||||||||||||||||| | ||||||||| || ||||| ||||| |||||| |
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| T |
32532430 |
gcaaaattgcagtattagttggagcacaagtcaatgttctggtttgtaacttgagtagagaaaataacaagcatgcaactgtcttagttttccctgtc |
32532527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 308 - 506
Target Start/End: Original strand, 32525937 - 32526135
Alignment:
| Q |
308 |
tttcattctcttaccattgccaaatagcacaatgtcacctaaaccatatgtatcatggtcaggtgaatctgtaactaaactatgcaaccgaattgccacc |
407 |
Q |
| |
|
|||||||||||||| ||| ||||| |||||||||||||||| ||||||||| ||| | ||| ||||||| |||| || |||||||| ||||||||||| |
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| T |
32525937 |
tttcattctcttactatttccaaagagcacaatgtcacctagaccatatgtttcaagctcaagtgaatccataaccaacctatgcaatcgaattgccact |
32526036 |
T |
|
| Q |
408 |
tgcaaaattgcagtattagttggagcacaggtcaatgttcttgatttcaacttgagtagagaaaaaagcaagcatgcgacagtctttgtttttcctgtc |
506 |
Q |
| |
|
||||||| |||||||||||| |||||||| ||||||||||| | ||| |||| ||||| |||||| ||||||||||| || ||||| ||||| |||||| |
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| T |
32526037 |
tgcaaaactgcagtattagtaggagcacaagtcaatgttctggtttttaactcgagtaaagaaaatagcaagcatgcaactgtcttcgttttccctgtc |
32526135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 241 - 506
Target Start/End: Original strand, 32614772 - 32615037
Alignment:
| Q |
241 |
agcactgcattagatttttcacgcgataatcaagaaagatatcttcaagacccggacaactatccactttcattctcttaccattgccaaatagcacaat |
340 |
Q |
| |
|
|||||||||| |||||| | || ||||||||||||||||||||| ||||||| ||| || ||| | |||||||||||| ||||||||| || ||||| |
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| T |
32614772 |
agcactgcatgagatttcttacacgataatcaagaaagatatctccaagacctggataagaatctaacttcattctcttattattgccaaagagaacaat |
32614871 |
T |
|
| Q |
341 |
gtcacctaaaccatatgtatcatggtcaggtgaatctgtaactaaactatgcaaccgaattgccacctgcaaaattgcagtattagttggagcacaggtc |
440 |
Q |
| |
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||| |||||||| ||||||||||| ||| |||||| ||||||||||||| | | | ||||||| ||||||||||| ||||| |||||||| || || |
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| T |
32614872 |
gtctcctaaaccgtatgtatcatgctcaactgaatccataactaaactatgtattctagttgccacttgcaaaattgcggtatttgttggagcgcaagtt |
32614971 |
T |
|
| Q |
441 |
aatgttcttgatttcaacttgagtagagaaaaaagcaagcatgcgacagtctttgtttttcctgtc |
506 |
Q |
| |
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| |||||| | ||| ||||||| ||||||||| | ||||||||| |||||||| ||||| |||||| |
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| T |
32614972 |
agtgttctggtttttaacttgaatagagaaaacaacaagcatgcaacagtcttcgttttccctgtc |
32615037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 499
Target Start/End: Original strand, 28857227 - 28857310
Alignment:
| Q |
416 |
tgcagtattagttggagcacaggtcaatgttcttgatttcaacttgagtagagaaaaaagcaagcatgcgacagtctttgtttt |
499 |
Q |
| |
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||||||||||||||||||||| || |||||||| | ||| |||||||| || ||||| | |||| | || || ||||||||||| |
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| T |
28857227 |
tgcagtattagttggagcacatgttaatgttctggctttaaacttgagcagggaaaataacaaggaagccactgtctttgtttt |
28857310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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