View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_low_2 (Length: 702)
Name: NF16638_low_2
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_low_2 |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 12 - 665
Target Start/End: Original strand, 33936897 - 33937524
Alignment:
| Q |
12 |
atgaaaaatgttaatttaacctaaaggctgtgttatattttactgcaaattc-tgatctggccatgatataaggatattagttacaatttacctttccct |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33936897 |
atgaaaaatgttaatttaacctaaaggctgtgttatattttactgcaaattcatgatctggccatgatataaggatattagttacagtttacctttccct |
33936996 |
T |
|
| Q |
111 |
atgttgatttctaattataataagcaacattttcgtaatgccctttgcatttgcaagggacattgcagtactccttttgtcctacaagagtaactcattc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33936997 |
atgttgatttctaattataataagcaacattttcgtaatgccctttgcatttgcaagggacattgcagtactccttttgtcctacaagagtaactcattc |
33937096 |
T |
|
| Q |
211 |
caccatttcattaagaaaagtgcaagatcgaaagagagnnnnnnnntgacatgataatgaatgatcggtttatgagtacatatctgaccaaacttcaaac |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
33937097 |
caccatttcattaagaaaagtgcaagatcgaaagagagaaaaaaaatgacatgataatgaatgatcggtttatgattacatatccgaccaaacttcaaat |
33937196 |
T |
|
| Q |
311 |
gtaagattgtgttcatcttaatcttaattagatgatacttctttgaatgcaatattaaggtgggtatactctatttttaaataaattaatacgaaaatat |
410 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33937197 |
gtaagattgtgttccccttaat------tagatgatacttctttgaatgcaatattaaggtgggtatactctatttttaaataaattaattcgaaaatat |
33937290 |
T |
|
| Q |
411 |
gacatgacattgagtaagtgagtgacgtatttaagacaaattttctacaaataagtcactcactatagaatggagagagtagatggtaagggaaatattt |
510 |
Q |
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| T |
33937291 |
gacatggcattgagtaagtgagtgacgtatttaagacaaattttcttcaaataagtcactcactatagaatggagagagtagatggtaagggaaatattt |
33937390 |
T |
|
| Q |
511 |
acttaatctaagacctaatccaagacgaaaactcaatccaagaccgtactaacgtccaaagagaaccaaaattgttgcaggatagaaaaaggtgatgagc |
610 |
Q |
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| T |
33937391 |
acttaatctaagacctaatccaagacgaaaactcaatccaagaccgtactaacgtccaaagagaaccaaaattgttgcaggat----------------- |
33937473 |
T |
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| Q |
611 |
tgattcaacacctccgcaatcgaacatgcaatagtgaacatctggagtagtaata |
665 |
Q |
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| T |
33937474 |
----tcaacacctccgcaaccgaacatgcaatagtgaacatctggagtagtaata |
33937524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 558 - 645
Target Start/End: Original strand, 5318037 - 5318124
Alignment:
| Q |
558 |
actaacgtccaaagagaaccaaaattgttgcaggatagaaaaaggtgatgagctgattcaacacctccgcaatcgaacatgcaatagt |
645 |
Q |
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| T |
5318037 |
actaacgtcgaaagagaaccaaaattgctccatgaaagaaaaaggtggtgagctgattcaacacctccacaaccgaacacacaatagt |
5318124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 380 - 418
Target Start/End: Original strand, 49630954 - 49630992
Alignment:
| Q |
380 |
tctatttttaaataaattaatacgaaaatatgacatgac |
418 |
Q |
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| T |
49630954 |
tctatttttaaataaagtaatacgataatatgacatgac |
49630992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 423
Target Start/End: Complemental strand, 9952 - 9911
Alignment:
| Q |
382 |
tatttttaaataaattaatacgaaaatatgacatgacattga |
423 |
Q |
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| T |
9952 |
tatttttaaataaattaatataaaaatatgacatgacgttga |
9911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 423
Target Start/End: Original strand, 24815602 - 24815643
Alignment:
| Q |
382 |
tatttttaaataaattaatacgaaaatatgacatgacattga |
423 |
Q |
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| T |
24815602 |
tatttttaaataaatttatacaaaaatatgacatgtcattga |
24815643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 544 - 589
Target Start/End: Original strand, 33096914 - 33096959
Alignment:
| Q |
544 |
caatccaagaccgtactaacgtccaaagagaaccaaaattgttgca |
589 |
Q |
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| T |
33096914 |
caatcgaagaccgaactaacatccaaagagaaccaaaagtgttgca |
33096959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 383 - 423
Target Start/End: Original strand, 28957976 - 28958016
Alignment:
| Q |
383 |
atttttaaataaattaatacgaaaatatgacatgacattga |
423 |
Q |
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|||||||||||||||||||| ||||||| ||||| |||||| |
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| T |
28957976 |
atttttaaataaattaatacaaaaatataacatgtcattga |
28958016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 389 - 421
Target Start/End: Original strand, 6366088 - 6366120
Alignment:
| Q |
389 |
aaataaattaatacgaaaatatgacatgacatt |
421 |
Q |
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||||||||||||| ||||||||||||||||||| |
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| T |
6366088 |
aaataaattaatatgaaaatatgacatgacatt |
6366120 |
T |
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