View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16638_low_23 (Length: 462)

Name: NF16638_low_23
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16638_low_23
NF16638_low_23
[»] chr2 (5 HSPs)
chr2 (20-437)||(28782815-28783232)
chr2 (20-247)||(28741995-28742222)
chr2 (152-256)||(28699494-28699598)
chr2 (80-131)||(28699422-28699473)
chr2 (158-256)||(28735000-28735098)
[»] chr8 (6 HSPs)
chr8 (80-247)||(10769397-10769564)
chr8 (53-131)||(2034784-2034862)
chr8 (51-113)||(2055874-2055936)
chr8 (80-131)||(2048105-2048156)
chr8 (80-113)||(2059078-2059111)
chr8 (80-112)||(2052018-2052050)
[»] chr4 (2 HSPs)
chr4 (80-131)||(48904896-48904947)
chr4 (400-436)||(3284202-3284238)
[»] chr6 (1 HSPs)
chr6 (376-436)||(10384036-10384097)


Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 20 - 437
Target Start/End: Original strand, 28782815 - 28783232
Alignment:
Q  20 gagcagagatcccatcaatcccttttgtattgtagtaggctacatattctgaaatagttatttctttgtatttgggaggattgtcttctgataaaaattc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28782815 gagcagagatcccatcaatcccttttgtattgtagtaggctacatattctgaaatagttatttctttgtatttgggaggattgtcttctgataaaaattc 28782914  T
Q  120 ttttataggtccgtattggtttgagaaagagttaagatctgcattgaaaaaacatgcaacagatactctaggacctatgatgtttgccaacactttgtgc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28782915 ttttataggtccgtattggtttgagaaagagttaagatctgcattgaaaaaacatgcaacagatactctaggacctatgatgtttgccaacactttgtgc 28783014  T
Q  220 tccacactcttgaatttgtcatttgttaccagctgtaactcaaattacaacaatattaattagctacattcgtatatataagttccttacacacacaata 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28783015 tccacactcttgaatttgtcatttgttaccagctgtaactcaaattacaacaatattaattagctacattcgtatatataagttccttacacacacaata 28783114  T
Q  320 agaacatgtagggggaataattagaatcatgacattaaagaaggcaaggagtggaactatatatattacttgcaacactgaaccctaatttatcacagta 419  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28783115 agaacgtgtagggggaataattagaatcatgacattaaagaaggcaaggagtggaactatatatattacttgcaacactgaaccctaatttattacagta 28783214  T
Q  420 atacaaacggaactatag 437  Q
    ||||||||||||||||||    
T  28783215 atacaaacggaactatag 28783232  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 28741995 - 28742222
Alignment:
Q  20 gagcagagatcccatcaatcccttttgtattgtagtaggctacatattctgaaatagttatttctttgtatttgggaggattgtcttctgataaaaattc 119  Q
    |||| ||||| ||||||| |||||||| |||||||||||||||| | |||| || |||  ||||| | ||| | ||||| |||||||||||||||| |||    
T  28741995 gagctgagatgccatcaagcccttttgcattgtagtaggctacaaaatctgtaaaagtggtttctctatatcttggagggttgtcttctgataaaatttc 28742094  T
Q  120 ttttataggtccgtattggtttgagaaagagttaagatctgcattgaaaaaacatgcaacagatactctaggacctatgatgtttgccaacactttgtgc 219  Q
    |||||||||||| ||  | |||      |   || || ||||  |||||||| |||||||||||||||| ||||| ||  | ||||| |  ||| |||||    
T  28742095 ttttataggtccatagagcttttcttgtgctctaggacctgccctgaaaaaagatgcaacagatactcttggaccaatagtatttgctagtactctgtgc 28742194  T
Q  220 tccacactcttgaatttgtcatttgtta 247  Q
    || |||||||||||| ||||||||||||    
T  28742195 tcaacactcttgaatctgtcatttgtta 28742222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 152 - 256
Target Start/End: Original strand, 28699494 - 28699598
Alignment:
Q  152 taagatctgcattgaaaaaacatgcaacagatactctaggacctatgatgtttgccaacactttgtgctccacactcttgaatttgtcatttgttaccag 251  Q
    ||||| |||| |||||||| ||||||||||||| ||| ||||| |||   |||||||  ||| | || || ||||||||||||||||||||||||| |||    
T  28699494 taagacctgccttgaaaaagcatgcaacagatattcttggaccaatgccatttgccagtactctatgttcaacactcttgaatttgtcatttgttatcag 28699593  T
Q  252 ctgta 256  Q
    |||||    
T  28699594 ctgta 28699598  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 28699422 - 28699473
Alignment:
Q  80 tttctttgtatttgggaggattgtcttctgataaaaattcttttataggtcc 131  Q
    ||||||||||| ||||||| |||| ||||||||| |||||| ||||||||||    
T  28699422 tttctttgtatctgggagggttgttttctgataataattctgttataggtcc 28699473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 256
Target Start/End: Original strand, 28735000 - 28735098
Alignment:
Q  158 ctgcattgaaaaaacatgcaacagatactctaggacctatgatgtttgccaacactttgtgctccacactcttgaatttgtcatttgttaccagctgta 256  Q
    |||| |||||||| ||||||||||||| ||| ||||| |||   |||||||  ||| | || || |||||||||||||| ||||||||||  |||||||    
T  28735000 ctgccttgaaaaagcatgcaacagatattcttggaccaatgtcatttgccagtactctatgttcaacactcttgaatttatcatttgttataagctgta 28735098  T

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Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 80 - 247
Target Start/End: Complemental strand, 10769564 - 10769397
Alignment:
Q  80 tttctttgtatttgggaggattgtcttctgataaaaattcttttataggtccgtattggtttgagaaagagttaagatctgcattgaaaaaacatgcaac 179  Q
    ||||| ||||| |||||||||||||||||||||| | ||| ||||||||||| ||  | |||||| | ||  || || | |    |||||||||||||||    
T  10769564 tttctctgtatatgggaggattgtcttctgataatagttcctttataggtccatagagctttgaggatgacctatgaccggtgcagaaaaaacatgcaac 10769465  T
Q  180 agatactctaggacctatgatgtttgccaacactttgtgctccacactcttgaatttgtcatttgtta 247  Q
    ||||| ||| ||||| |   | ||||| |  ||| |||||||||||||||||||||||||||||||||    
T  10769464 agatattcttggaccaacattatttgcaagaactctgtgctccacactcttgaatttgtcatttgtta 10769397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 131
Target Start/End: Complemental strand, 2034862 - 2034784
Alignment:
Q  53 agtaggctacatattctgaaatagttatttctttgtatttgggaggattgtcttctgataaaaattcttttataggtcc 131  Q
    |||| |||||||| || ||||  ||| ||||| ||||||| |||||||||||||||||||| | ||| |||||||||||    
T  2034862 agtaagctacataatcagaaaccgttgtttctctgtatttaggaggattgtcttctgataatagttcctttataggtcc 2034784  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 113
Target Start/End: Complemental strand, 2055936 - 2055874
Alignment:
Q  51 gtagtaggctacatattctgaaatagttatttctttgtatttgggaggattgtcttctgataa 113  Q
    ||||||||||||||| || | || |||  ||||||||||||| ||||||||||||||||||||    
T  2055936 gtagtaggctacataatcagcaacagtagtttctttgtatttaggaggattgtcttctgataa 2055874  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 2048156 - 2048105
Alignment:
Q  80 tttctttgtatttgggaggattgtcttctgataaaaattcttttataggtcc 131  Q
    ||||| ||||||| |||||||||||||||||||| | |||||| ||||||||    
T  2048156 tttctctgtatttaggaggattgtcttctgataatagttctttcataggtcc 2048105  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 2059111 - 2059078
Alignment:
Q  80 tttctttgtatttgggaggattgtcttctgataa 113  Q
    ||||| ||||||||||||||||||||||||||||    
T  2059111 tttctctgtatttgggaggattgtcttctgataa 2059078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 2052050 - 2052018
Alignment:
Q  80 tttctttgtatttgggaggattgtcttctgata 112  Q
    ||||| |||||||||||||||||||||||||||    
T  2052050 tttctctgtatttgggaggattgtcttctgata 2052018  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 48904896 - 48904947
Alignment:
Q  80 tttctttgtatttgggaggattgtcttctgataaaaattcttttataggtcc 131  Q
    ||||| |||||||||||||||||||||| ||||| | ||| |||||||||||    
T  48904896 tttctctgtatttgggaggattgtcttcagataatagttcctttataggtcc 48904947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 436
Target Start/End: Complemental strand, 3284238 - 3284202
Alignment:
Q  400 aaccctaatttatcacagtaatacaaacggaactata 436  Q
    |||||||||| |||||||||||| |||||||||||||    
T  3284238 aaccctaattcatcacagtaataaaaacggaactata 3284202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 436
Target Start/End: Complemental strand, 10384097 - 10384036
Alignment:
Q  376 ctatatatattacttgcaacactgaa-ccctaatttatcacagtaatacaaacggaactata 436  Q
    |||||||||||||||  || ||| || ||||||||||||||||||||||||| | |||||||    
T  10384097 ctatatatattacttataatactaaaaccctaatttatcacagtaatacaaatgaaactata 10384036  T

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