View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_low_25 (Length: 452)
Name: NF16638_low_25
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 407
Target Start/End: Original strand, 2048418 - 2048822
Alignment:
| Q |
11 |
ttatactctggaattagatatacctggttccaccttgaataaaaaatcagcttcccaccttgttatatattttgttcaatctatgtacacaattcctaat |
110 |
Q |
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| T |
2048418 |
ttatactctgaatttagatatac-tagttccactttgaataaaaaa-cagcatcc-agctagttatatattatgttcaatctatgtacacagttcctaat |
2048514 |
T |
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| Q |
111 |
atttgctcctgtatgtcaaagatcactagca------ccaacatcattaggcgccttattat-atgaataattacatgcaaagatcactggcaccgtatc |
203 |
Q |
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| T |
2048515 |
atttgctcctgtatatcaaagatcactagcagtagcaccaacatcattaggcaccttattattatgaatatttacatgcaaagatcactagcgtcatatc |
2048614 |
T |
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| Q |
204 |
attacgttcctaattttatgaatatttacatgtagttatgtctagctatcttttt-attttatttagattacaactctcc---ctctttttattgagtat |
299 |
Q |
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| T |
2048615 |
attatgttcctaattttatgaatatttacatgtagttatgtctagccatcttttttattttatttagattgcatctctcctccctctttttattgggtat |
2048714 |
T |
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| Q |
300 |
ttgctttgtggaaaactcaaataaacaaaaggtgaaggttggaaaaacttgcagtggttcaactcttgaattgacactcggcatcctatctatgttgttc |
399 |
Q |
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| T |
2048715 |
ttgctttgtggaaaactcaaataaacaaaagttggaggttggaaaaacttacagtggttcgactcttgaatcgacactcggcatcctatctatgttgttc |
2048814 |
T |
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| Q |
400 |
atgatcac |
407 |
Q |
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| T |
2048815 |
atgatcac |
2048822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 2054612 - 2054678
Alignment:
| Q |
34 |
ctggttccaccttgaataaaa-aatcagcttcccaccttgttatatattttgttcaatctatgtaca |
99 |
Q |
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| T |
2054612 |
ctggttccaccttgaataaaaaaatcagcatcctaactagttatatattttgttcaatctatgtaca |
2054678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 2054722 - 2054793
Alignment:
| Q |
163 |
ttatatgaataattacatgcaaagatcactggcaccgtatcattacgttcctaattttatgaatatttacat |
234 |
Q |
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| T |
2054722 |
ttatatgaatatttacatgcaaagatcacttgcaccatatcatcatgttcttatttatatgaatatttacat |
2054793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 306 - 437
Target Start/End: Original strand, 2054796 - 2054927
Alignment:
| Q |
306 |
tgtggaaaactcaaataaacaaaaggtgaaggttggaaaaacttgcagtggttcaactcttgaattgacactcggcatcctatctatgttgttcatgatc |
405 |
Q |
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| T |
2054796 |
tgtggaaaactcaaataaatcgaagttcgaggttgaaaacatttacggtggttcaactcttgaaatggcgctcggcatcctagctacattgttcatgctc |
2054895 |
T |
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| Q |
406 |
acgcgcacaaattgcattaggctcctaattat |
437 |
Q |
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| T |
2054896 |
acttgtaccagttgcattaggctcttaattat |
2054927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 2062919 - 2062960
Alignment:
| Q |
72 |
gttatatattttgttcaatctatg--tacacaattcctaata |
111 |
Q |
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| T |
2062919 |
gttatatattttgttcaatctatgtctacacaattcctaata |
2062960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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