View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16638_low_26 (Length: 449)
Name: NF16638_low_26
Description: NF16638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16638_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 22 - 265
Target Start/End: Complemental strand, 35159123 - 35158875
Alignment:
| Q |
22 |
atttagatcataagatatgcaagctggtttaaataacacaaaatgggttgtaatttaatttcttcaaaattcaataaggataaattttgttccaagactt |
121 |
Q |
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| T |
35159123 |
atttagatcataagatatgcaagctggtttaaataacacaaaatgggttgtattttaatttcttcaaaattcaataaggagaaattttgttccaagactt |
35159024 |
T |
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| Q |
122 |
gaaaactctatttagcacaaag-----aatgaataaaaaatttcaccatcaatgatatgcagcgttggaattaagcatgattgcaacaactaacttagta |
216 |
Q |
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| T |
35159023 |
gaaaactctatttagcacaaagaaaacaatgaataaaatttttcaccatcaatgatatgcagcgttggaattaagcatgattgcaacaactaacttggta |
35158924 |
T |
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| Q |
217 |
aagatattattctttcttctaactttattgttcattttaagagaatagg |
265 |
Q |
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| T |
35158923 |
aagatattattctttcttctaactttattgttcattttaagagaatagg |
35158875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 287 - 435
Target Start/End: Complemental strand, 35158615 - 35158467
Alignment:
| Q |
287 |
cttcttatctttggagcatgcatcacgtcctcgagaaacaatttctttctggatgtgaagtacaacttcacatctcctatgccgacaactttagcagagg |
386 |
Q |
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| T |
35158615 |
cttcttatctttggagcatgcatcacgtcctcgagaaacaatttttttctggatgtgaagtacaacttcacatctcctatgccgacaactttagcagagg |
35158516 |
T |
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| Q |
387 |
tgtatattttgaacatggcatgattatagaagatacgacccgagacacc |
435 |
Q |
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| T |
35158515 |
tgtatattttcaacatggcatgatcatagaatatacgacccgagacacc |
35158467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 363
Target Start/End: Complemental strand, 12113887 - 12113812
Alignment:
| Q |
288 |
ttcttatctttggagcatgcatcacgtcctcgagaaacaatttctttctggatgtgaagtacaacttcacatctcc |
363 |
Q |
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| T |
12113887 |
ttcttatttttggagcatgcattacgtcctagagaataattttcttttcggatgtgaattacaacttcatatctcc |
12113812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 323
Target Start/End: Original strand, 20506876 - 20506911
Alignment:
| Q |
288 |
ttcttatctttggagcatgcatcacgtcctcgagaa |
323 |
Q |
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| T |
20506876 |
ttcttatctttggagcatgcatcacgtcctagagaa |
20506911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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